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PMFBP1 polyamine modulated factor 1 binding protein 1 [ Gallus gallus (chicken) ]

Gene ID: 100857777, updated on 17-Aug-2024

Summary

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Symbol
PMFBP1provided by CGNC
Full Name
polyamine modulated factor 1 binding protein 1provided by CGNC
Primary source
CGNC:65279
Gene type
protein coding
RefSeq status
MODEL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs
human mouse all
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Genomic context

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See PMFBP1 in Genome Data Viewer
Location:
chromosome: 11
Exon count:
15
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 11 NC_052542.1 (19345980..19362905)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 11 NC_052583.1 (19629957..19710849)

Chromosome 11 - NC_052542.1Genomic Context describing neighboring genes Neighboring gene zinc finger homeobox 3 Neighboring gene microRNA 1699 Neighboring gene uncharacterized LOC107054337 Neighboring gene uncharacterized LOC121111704 Neighboring gene DEAH-box helicase 38 Neighboring gene dihydroorotate dehydrogenase (quinone) Neighboring gene IST1, ESCRT-III associated factor

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in spermatogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
polyamine-modulated factor 1-binding protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052542.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    19345980..19362905
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046899688.1 → XP_046755644.1  polyamine-modulated factor 1-binding protein 1 isoform X10

  2. XM_046899686.1 → XP_046755642.1  polyamine-modulated factor 1-binding protein 1 isoform X7

  3. XM_025154345.3 → XP_025010113.2  polyamine-modulated factor 1-binding protein 1 isoform X8

    Conserved Domains (1) summary
    TIGR02169
    Location:313 → 510
    SMC_prok_A; chromosome segregation protein SMC, primarily archaeal type

  4. XM_046899687.1 → XP_046755643.1  polyamine-modulated factor 1-binding protein 1 isoform X7

  5. XM_025154342.3 → XP_025010110.1  polyamine-modulated factor 1-binding protein 1 isoform X5

    Conserved Domains (1) summary
    cl25732
    Location:395 → 592
    SMC_N; RecF/RecN/SMC N terminal domain

  6. XM_040707217.2 → XP_040563151.1  polyamine-modulated factor 1-binding protein 1 isoform X1

    Conserved Domains (1) summary
    TIGR02169
    Location:395 → 592
    SMC_prok_A; chromosome segregation protein SMC, primarily archaeal type

  7. XM_040707222.2 → XP_040563156.1  polyamine-modulated factor 1-binding protein 1 isoform X9

    Conserved Domains (1) summary
    COG1196
    Location:398 → 631
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

  8. XM_015292696.4 → XP_015148182.2  polyamine-modulated factor 1-binding protein 1 isoform X2

    Conserved Domains (1) summary
    TIGR02169
    Location:366 → 586
    SMC_prok_A; chromosome segregation protein SMC, primarily archaeal type

  9. XM_015292697.4 → XP_015148183.2  polyamine-modulated factor 1-binding protein 1 isoform X3

    Conserved Domains (1) summary
    TIGR02169
    Location:379 → 576
    SMC_prok_A; chromosome segregation protein SMC, primarily archaeal type

  10. XM_015292698.4 → XP_015148184.2  polyamine-modulated factor 1-binding protein 1 isoform X4

    Conserved Domains (1) summary
    TIGR02169
    Location:369 → 566
    SMC_prok_A; chromosome segregation protein SMC, primarily archaeal type

  11. XM_025154343.3 → XP_025010111.2  polyamine-modulated factor 1-binding protein 1 isoform X6

    Conserved Domains (1) summary
    TIGR02169
    Location:353 → 550
    SMC_prok_A; chromosome segregation protein SMC, primarily archaeal type

RNA

  1. XR_005863008.2 RNA Sequence

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052583.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    19629957..19710849
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046925857.1 → XP_046781813.1  polyamine-modulated factor 1-binding protein 1 isoform X11

  2. XM_040681214.2 → XP_040537148.1  polyamine-modulated factor 1-binding protein 1 isoform X7

    Conserved Domains (2) summary
    TIGR02169
    Location:325 → 522
    SMC_prok_A; chromosome segregation protein SMC, primarily archaeal type
    pfam08537
    Location:585 → 684
    NBP1; Fungal Nap binding protein NBP1

  3. XM_046925858.1 → XP_046781814.1  polyamine-modulated factor 1-binding protein 1 isoform X11

  4. XM_040681215.2 → XP_040537149.1  polyamine-modulated factor 1-binding protein 1 isoform X7

    Conserved Domains (2) summary
    TIGR02169
    Location:325 → 522
    SMC_prok_A; chromosome segregation protein SMC, primarily archaeal type
    pfam08537
    Location:585 → 684
    NBP1; Fungal Nap binding protein NBP1

  5. XM_046925861.1 → XP_046781817.1  polyamine-modulated factor 1-binding protein 1 isoform X10

  6. XM_046925859.1 → XP_046781815.1  polyamine-modulated factor 1-binding protein 1 isoform X7

  7. XM_040681216.2 → XP_040537150.1  polyamine-modulated factor 1-binding protein 1 isoform X8

    Conserved Domains (1) summary
    TIGR02169
    Location:313 → 510
    SMC_prok_A; chromosome segregation protein SMC, primarily archaeal type

  8. XM_046925860.1 → XP_046781816.1  polyamine-modulated factor 1-binding protein 1 isoform X7

  9. XM_040681211.2 → XP_040537145.1  polyamine-modulated factor 1-binding protein 1 isoform X5

    Conserved Domains (1) summary
    TIGR02169
    Location:395 → 592
    SMC_prok_A; chromosome segregation protein SMC, primarily archaeal type

  10. XM_040681207.2 → XP_040537141.1  polyamine-modulated factor 1-binding protein 1 isoform X1

    Conserved Domains (2) summary
    COG0419
    Location:366 → 764
    SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]
    TIGR02169
    Location:395 → 592
    SMC_prok_A; chromosome segregation protein SMC, primarily archaeal type

  11. XM_040681217.2 → XP_040537151.1  polyamine-modulated factor 1-binding protein 1 isoform X9

    Conserved Domains (1) summary
    COG1196
    Location:398 → 631
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

  12. XM_040681208.2 → XP_040537142.1  polyamine-modulated factor 1-binding protein 1 isoform X2

    Conserved Domains (1) summary
    TIGR02169
    Location:366 → 586
    SMC_prok_A; chromosome segregation protein SMC, primarily archaeal type

  13. XM_040681209.2 → XP_040537143.1  polyamine-modulated factor 1-binding protein 1 isoform X3

    Conserved Domains (2) summary
    COG0419
    Location:350 → 748
    SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]
    TIGR02169
    Location:379 → 576
    SMC_prok_A; chromosome segregation protein SMC, primarily archaeal type

  14. XM_040681210.2 → XP_040537144.1  polyamine-modulated factor 1-binding protein 1 isoform X4

    Conserved Domains (2) summary
    COG0419
    Location:340 → 738
    SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]
    TIGR02169
    Location:369 → 566
    SMC_prok_A; chromosome segregation protein SMC, primarily archaeal type

  15. XM_040681212.2 → XP_040537146.1  polyamine-modulated factor 1-binding protein 1 isoform X6

    Conserved Domains (2) summary
    COG0419
    Location:324 → 722
    SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]
    TIGR02169
    Location:353 → 550
    SMC_prok_A; chromosome segregation protein SMC, primarily archaeal type

RNA

  1. XR_005853355.2 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version

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