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SIGMAR1 sigma non-opioid intracellular receptor 1 [ Gallus gallus (chicken) ]

Gene ID: 100859748, updated on 17-Aug-2024

Summary

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Symbol
SIGMAR1provided by CGNC
Full Name
sigma non-opioid intracellular receptor 1provided by CGNC
Primary source
CGNC:63401
See related
Ensembl:ENSGALG00010010671
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Also known as
OPRS1; Sigma1R
Orthologs
human mouse all
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Genomic context

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See SIGMAR1 in Genome Data Viewer
Location:
chromosome: Z
Exon count:
5
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) Z NC_052572.1 (8478240..8481305, complement)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) Z NC_059536.1 (8478240..8481305, complement)

Chromosome Z - NC_052572.1Genomic Context describing neighboring genes Neighboring gene dynactin subunit 3 Neighboring gene AT-rich interaction domain 3C Neighboring gene uncharacterized LOC121108636 Neighboring gene galactose-1-phosphate uridylyltransferase Neighboring gene uncharacterized LOC121108637

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Chicken genomics resource: sequencing and annotation of 35,407 ESTs from single and multiple tissue cDNA libraries and CAP3 assembly of a chicken gene index. Carre W, et al. Physiol Genomics, 2006 May 16. PMID 16554550
  2. A comprehensive collection of chicken cDNAs. Boardman PE, et al. Curr Biol, 2002 Nov 19. PMID 12445392
  3. Full-length cDNAs from chicken bursal lymphocytes to facilitate gene function analysis. Caldwell RB, et al. Genome Biol, 2005. PMID 15642098, Free PMC Article
  4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
  5. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
sigma non-opioid intracellular receptor 1
Names
Sigma 1-type opioid receptor
Sigma1-receptor

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001270557.4 → NP_001257486.3  sigma non-opioid intracellular receptor 1 isoform 1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) encodes the longer isoform (1).
    Source sequence(s)
    JAENSK010000087
    UniProtKB/Swiss-Prot
    Q5ZL84
    Related
    ENSGALP00010014359.1, ENSGALT00010025392.1
    Conserved Domains (1) summary
    pfam04622
    Location:24 → 212
    ERG2_Sigma1R; ERG2 and Sigma1 receptor like protein

  2. NM_001318004.2 → NP_001304933.1  sigma non-opioid intracellular receptor 1 isoform 2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) contains a distinct terminal exon compared to variant 1. The resulting isoform (2) has a shorter and distinct C-terminus.
    Source sequence(s)
    JAENSK010000087
    UniProtKB/TrEMBL
    A0A1D5P285
    Conserved Domains (1) summary
    pfam04622
    Location:24 → 148
    ERG2_Sigma1R; ERG2 and Sigma1 receptor like protein

RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052572.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    8478240..8481305 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040655310.2 → XP_040511244.1  sigma non-opioid intracellular receptor 1 isoform X1

  2. XM_046905169.1 → XP_046761125.1  sigma non-opioid intracellular receptor 1 isoform X2

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_059536.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    8478240..8481305 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046934604.1 → XP_046790560.1  sigma non-opioid intracellular receptor 1 isoform X1

  2. XM_046934605.1 → XP_046790561.1  sigma non-opioid intracellular receptor 1 isoform X2

Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q5ZL84.1 GenPept UniProtKB/Swiss-Prot:Q5ZL84

Gene LinkOut

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