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HIGD1AP3 HIG1 hypoxia inducible domain family member 1A pseudogene 3 [ Homo sapiens (human) ]

Gene ID: 100859920, updated on 10-Dec-2024

Summary

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Official Symbol
HIGD1AP3provided by HGNC
Official Full Name
HIG1 hypoxia inducible domain family member 1A pseudogene 3provided by HGNC
Primary source
HGNC:HGNC:42998
See related
AllianceGenome:HGNC:42998
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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See HIGD1AP3 in Genome Data Viewer
Location:
5q35.2
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 5 NC_000005.10 (174632834..174633406)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 5 NC_060929.1 (175173788..175174360)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 5 NC_000005.9 (174059837..174060409)

Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr5:173999018-174000217 Neighboring gene SUMO2 pseudogene 6 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:174035513-174036138 Neighboring gene uncharacterized LOC105377740 Neighboring gene ReSE screen-validated silencer GRCh37_chr5:174056950-174057177 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:174099129-174099629 Neighboring gene NANOG hESC enhancer GRCh37_chr5:174108078-174108601 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr5:174119538-174120038 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr5:174120039-174120539 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:174135192-174135692 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:174135693-174136193 Neighboring gene NANOG hESC enhancer GRCh37_chr5:174147650-174148179 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:174158556-174159119 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:174159120-174159682 Neighboring gene VISTA enhancer hs1256 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr5:174162201-174163131 Neighboring gene msh homeobox 2 Neighboring gene microRNA 4634

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_031935.2 

    Range
    101..673
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000005.10 Reference GRCh38.p14 Primary Assembly

    Range
    174632834..174633406
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060929.1 Alternate T2T-CHM13v2.0

    Range
    175173788..175174360
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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