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Gm3411 predicted gene 3411 [ Mus musculus (house mouse) ]

Gene ID: 100861615, updated on 27-Nov-2024

Summary

Official Symbol
Gm3411provided by MGI
Official Full Name
predicted gene 3411provided by MGI
Primary source
MGI:MGI:3781589
See related
Ensembl:ENSMUSG00000079396 AllianceGenome:MGI:3781589
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
100041569
Expression
Biased expression in CNS E18 (RPKM 2.9), whole brain E14.5 (RPKM 1.8) and 12 other tissues See more
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Genomic context

See Gm3411 in Genome Data Viewer
Location:
14 A2; 14
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 14 NC_000080.7 (16182523..16210026)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 14 NC_000080.6 (6259747..6287250, complement)

Chromosome 14 - NC_000080.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_35813 Neighboring gene STARR-seq mESC enhancer starr_35814 Neighboring gene predicted gene 3618 Neighboring gene predicted gene, 52090 Neighboring gene STARR-seq mESC enhancer starr_35815 Neighboring gene predicted gene, 21103 Neighboring gene predicted gene, 41093 Neighboring gene predicted gene, 21560

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

General gene information

Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001270812.1NP_001257741.1  alpha takusan-like

    Status: VALIDATED

    Source sequence(s)
    AK049619
    Consensus CDS
    CCDS56927.1
    UniProtKB/TrEMBL
    A6NAU9, E9PV29, E9PXA1, E9PZ52, E9PZR1, E9Q033, E9Q0W4, E9Q240, E9Q2D9, E9Q2P2, E9Q3U9, E9Q6N8, E9Q7Z2, E9Q932, Q4FK70, Q8C7R2
    Related
    ENSMUSP00000127293.3, ENSMUST00000170104.3
    Conserved Domains (1) summary
    pfam04822
    Location:170
    Takusan; Takusan

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000080.7 Reference GRCm39 C57BL/6J

    Range
    16182523..16210026
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)