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Rhox4a2 reproductive homeobox 4A2 [ Mus musculus (house mouse) ]

Gene ID: 100861640, updated on 17-Aug-2024

Summary

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Official Symbol
Rhox4a2provided by MGI
Official Full Name
reproductive homeobox 4A2provided by MGI
Primary source
MGI:MGI:5434453
See related
Ensembl:ENSMUSG00000094945 AllianceGenome:MGI:5434453
Gene type
protein coding
RefSeq status
MODEL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Gm21098
Expression
Biased expression in placenta adult (RPKM 4.6), thymus adult (RPKM 0.5) and 2 other tissues See more
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Genomic context

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See Rhox4a2 in Genome Data Viewer
Location:
X A3.3; X
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) X NC_000086.8 (36572513..36577274)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) X NC_000086.7 (37390860..37395621)

Chromosome X - NC_000086.8Genomic Context describing neighboring genes Neighboring gene reproductive homeobox 4A Neighboring gene reproductive homeobox 3A2 Neighboring gene reproductive homeobox 2B Neighboring gene reproductive homeobox 3B, pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
paired mesoderm homeobox protein 2-like; rhox homeobox family member 1-like; uncharacterized protein Rhox4a2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000086.8 Reference GRCm39 C57BL/6J

    Range
    36572513..36577274
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003688971.3 → XP_003689019.1  rhox homeobox family member 1-like isoform X1

    See identical proteins and their annotated locations for XP_003689019.1

    UniProtKB/TrEMBL
    B7ZWB1, Q9D3I8
    Related
    ENSMUSP00000136542.2, ENSMUST00000179915.4
    Conserved Domains (2) summary
    cd00086
    Location:129 → 187
    homeodomain; Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
    cl38985
    Location:41 → 126
    P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases

  2. XM_006541565.1 → XP_006541628.1  paired mesoderm homeobox protein 2-like isoform X2

    See identical proteins and their annotated locations for XP_006541628.1

    UniProtKB/TrEMBL
    B7ZWB1
    Conserved Domains (2) summary
    cd00086
    Location:129 → 186
    homeodomain; Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
    cl38985
    Location:41 → 126
    P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases

  3. XM_011251026.1 → XP_011249328.1  uncharacterized protein Rhox4a2 isoform X3

    See identical proteins and their annotated locations for XP_011249328.1

    UniProtKB/TrEMBL
    B7ZWB1
    Conserved Domains (1) summary
    cl38985
    Location:41 → 126
    P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases
Nucleotide Protein Strain
Heading Accession and Version

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