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LINC00404 long intergenic non-protein coding RNA 404 [ Homo sapiens (human) ]

Gene ID: 100874160, updated on 12-Sep-2024

Summary

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Official Symbol
LINC00404provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 404provided by HGNC
Primary source
HGNC:HGNC:42734
See related
AllianceGenome:HGNC:42734
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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See LINC00404 in Genome Data Viewer
Location:
13q34
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 13 NC_000013.11 (112106095..112106629, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 13 NC_060937.1 (111349664..111350198, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 13 NC_000013.10 (112760409..112760943, complement)

Chromosome 13 - NC_000013.11Genomic Context describing neighboring genes Neighboring gene SOX1 overlapping transcript Neighboring gene small nucleolar RNA SNORD44 Neighboring gene MPRA-validated peak2105 silencer Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr13:112710313-112711042 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:112727858-112728638 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:112728639-112729419 Neighboring gene SRY-box transcription factor 1 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr13:112757992-112758611 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr13:112760473-112761092 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:112761713-112762331 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr13:112766326-112767525 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr13:112805199-112805774 Neighboring gene uncharacterized LOC100506016 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:112813701-112814406 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:112814407-112815111 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr13:112817596-112818292 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr13:112818293-112818987 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:112826532-112827032 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:112827033-112827533 Neighboring gene uncharacterized LOC105370370 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr13:112837781-112838980 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr13:112843656-112844855

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See Variation Viewer (GRCh37.p13)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_047014.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL356961

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000013.11 Reference GRCh38.p14 Primary Assembly

    Range
    112106095..112106629 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060937.1 Alternate T2T-CHM13v2.0

    Range
    111349664..111350198 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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