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Znf780b zinc finger protein 780B [ Rattus norvegicus (Norway rat) ]

Gene ID: 100910046, updated on 9-Dec-2024

Summary

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Official Symbol
Znf780bprovided by RGD
Official Full Name
zinc finger protein 780Bprovided by RGD
Primary source
RGD:6500398
See related
EnsemblRapid:ENSRNOG00000079029 AllianceGenome:RGD:6500398
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary
Predicted to enable metal ion binding activity. Predicted to be involved in regulation of DNA-templated transcription. Predicted to be located in nucleus. Orthologous to human ZNF780A (zinc finger protein 780A) and ZNF780B (zinc finger protein 780B). [provided by Alliance of Genome Resources, Dec 2024]
Expression
Biased expression in Brain (RPKM 85.6), Thymus (RPKM 67.5) and 9 other tissues See more
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Genomic context

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See Znf780b in Genome Data Viewer
Location:
1q21
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 1 NC_086019.1 (92136761..92159076)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 1 NC_051336.1 (83009174..83030463)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 1 NC_005100.4 (84576059..84656464)

Chromosome 1 - NC_086019.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC134483015 Neighboring gene protein NYNRIN-like Neighboring gene U6 spliceosomal RNA Neighboring gene transfer RNA serine (anticodon AGA) 27 Neighboring gene cold shock domain containing E1, pseudogene 2 Neighboring gene ribosomal protein L28 like 4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RGD

Function Evidence Code Pubs
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
uncharacterized protein LOC100910046; zinc finger protein 60
Names
zinc finger protein 60-like

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001432743.1 → NP_001419672.1  uncharacterized protein LOC100910046 isoform a

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000001
    UniProtKB/TrEMBL
    M0R7D4

  2. NM_001432744.1 → NP_001419673.1  uncharacterized protein LOC100910046 isoform a

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000001
    UniProtKB/TrEMBL
    M0R7D4

  3. NM_001432745.1 → NP_001419674.1  uncharacterized protein LOC100910046 isoform b

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000001
    UniProtKB/TrEMBL
    A0A8I6ARQ8

  4. NM_001432746.1 → NP_001419675.1  uncharacterized protein LOC100910046 isoform b

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000001
    UniProtKB/TrEMBL
    A0A8I6ARQ8

RNA

  1. NR_197306.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000001

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086019.1 Reference GRCr8

    Range
    92136761..92159076
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039100839.2 → XP_038956767.1  zinc finger protein 60 isoform X1

    Related
    ENSRNOP00000065360.4, ENSRNOT00000073966.4
    Conserved Domains (3) summary
    smart00349
    Location:14 → 75
    KRAB; krueppel associated box
    COG5048
    Location:248 → 653
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:503 → 523
    ZF_C2H2; C2H2 Zn finger [structural motif]

  2. XM_039100840.2 → XP_038956768.1  zinc finger protein 60 isoform X1

    Conserved Domains (3) summary
    smart00349
    Location:14 → 75
    KRAB; krueppel associated box
    COG5048
    Location:248 → 653
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:503 → 523
    ZF_C2H2; C2H2 Zn finger [structural motif]

  3. XM_039100841.2 → XP_038956769.1  zinc finger protein 60 isoform X2

    Conserved Domains (2) summary
    COG5048
    Location:174 → 579
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:429 → 449
    ZF_C2H2; C2H2 Zn finger [structural motif]
Nucleotide Protein Strain
Heading Accession and Version

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