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C10h17orf100 similar to human chromosome 17 open reading frame 100 [ Rattus norvegicus (Norway rat) ]

Gene ID: 100912483, updated on 27-Nov-2024

Summary

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Official Symbol
C10h17orf100provided by RGD
Official Full Name
similar to human chromosome 17 open reading frame 100provided by RGD
Primary source
RGD:6486589
See related
EnsemblRapid:ENSRNOG00000080030 AllianceGenome:RGD:6486589
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary
Orthologous to human C17orf100 (chromosome 17 open reading frame 100). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in Testes (RPKM 26.4), Brain (RPKM 23.0) and 9 other tissues See more
Orthologs
human mouse all
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Genomic context

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See C10h17orf100 in Genome Data Viewer
Location:
10q24
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 10 NC_086028.1 (57339186..57342233)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 10 NC_051345.1 (56840451..56843674)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 10 NC_005109.4 (58784444..58787713)

Chromosome 10 - NC_086028.1Genomic Context describing neighboring genes Neighboring gene thioredoxin domain containing 17 Neighboring gene mediator complex subunit 31 Neighboring gene solute carrier family 13 member 5 Neighboring gene uncharacterized LOC134480819 Neighboring gene probable serine/threonine-protein kinase drkD-like Neighboring gene XIAP associated factor 1 Neighboring gene F-box protein 39

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
similar to human chromosome 17 open reading frame 100; uncharacterized protein C17orf100 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001430329.1 → NP_001417258.1  similar to human chromosome 17 open reading frame 100

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000010

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086028.1 Reference GRCr8

    Range
    57339186..57342233
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_063270127.1 → XP_063126197.1  uncharacterized protein C17orf100 homolog

    UniProtKB/TrEMBL
    A0A8I6A7E3

  2. XM_008767908.4 → XP_008766130.1  uncharacterized protein C17orf100 homolog

    See identical proteins and their annotated locations for XP_008766130.1

    UniProtKB/TrEMBL
    A0A8I6A7E3
    Related
    ENSRNOP00000112162.1, ENSRNOT00000163339.1
Nucleotide Protein Strain
Heading Accession and Version

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