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LOC100996671 uncharacterized LOC100996671 [ Homo sapiens (human) ]

Gene ID: 100996671, updated on 22-Oct-2024

Summary

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Gene symbol
LOC100996671
Gene description
uncharacterized LOC100996671
See related
Ensembl:ENSG00000256128
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Restricted expression toward testis (RPKM 3.0) See more
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Genomic context

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See LOC100996671 in Genome Data Viewer
Location:
12q24.32
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 12 NC_000012.12 (126652946..126690318, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 12 NC_060936.1 (126660899..126698274, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 12 NC_000012.11 (127137492..127174864, complement)

Chromosome 12 - NC_000012.12Genomic Context describing neighboring genes Neighboring gene piggyBac transposable element derived 3 pseudogene Neighboring gene piggyBac transposable element derived 3 pseudogene 3 Neighboring gene NADH:ubiquinone oxidoreductase subunit A5 pseudogene 6 Neighboring gene long intergenic non-protein coding RNA 2824 Neighboring gene long intergenic non-protein coding RNA 944 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr12:127226104-127227303 Neighboring gene long intergenic non-protein coding RNA 943

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_110034.2 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the three exon transcript.
    Source sequence(s)
    AC006065
    Related
    ENST00000541065.2

  2. NR_110035.2 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks an alternate exon compared to variant 1.
    Source sequence(s)
    AC006065

  3. NR_110036.2 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) has an alternate exon in place of the last two exons compared to variant 1.
    Source sequence(s)
    AC006065
    Related
    ENST00000537478.2

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000012.12 Reference GRCh38.p14 Primary Assembly

    Range
    126652946..126690318 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060936.1 Alternate T2T-CHM13v2.0

    Range
    126660899..126698274 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases
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