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LOC100996681 uncharacterized LOC100996681 [ Homo sapiens (human) ]

Gene ID: 100996681, updated on 10-Dec-2024

Summary

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Gene symbol
LOC100996681
Gene description
uncharacterized LOC100996681
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Restricted expression toward testis (RPKM 1.3) See more
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Genomic context

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See LOC100996681 in Genome Data Viewer
Location:
19q13.11
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 19 NC_000019.10 (33553088..33557475)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 19 NC_060943.1 (36073812..36078201)

Chromosome 19 - NC_000019.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124904692 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr19:33897606-33898163 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 14446 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr19:33909297-33910182 Neighboring gene peptidase D Neighboring gene H3K4me1 hESC enhancer GRCh37_chr19:33976998-33977858 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr19:33977859-33978718 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr19:33978719-33979578 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr19:33994022-33994738 Neighboring gene OCT4-H3K4me1 hESC enhancer GRCh37_chr19:34001184-34001982 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr19:34011998-34012961 Neighboring gene uncharacterized LOC105372370 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr19:34012962-34013924 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr19:34024395-34024912 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr19:34024913-34025429 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr19:34057219-34058051 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr19:34058052-34058883 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr19:34073971-34074472 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr19:34093822-34095021 Neighboring gene ribosomal protein L21 pseudogene 131 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr19:34111820-34112564 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr19:34129278-34129809 Neighboring gene carbohydrate sulfotransferase 8 Neighboring gene ReSE screen-validated silencer GRCh37_chr19:34163847-34164027 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr19:34193437-34194010 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr19:34215088-34215685 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr19:34215686-34216282 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr19:34254252-34254856

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh38)

General gene information

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Other Names

  • CTD-2329C7.2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000019.10 Reference GRCh38.p14 Primary Assembly

    Range
    33553088..33557475
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_158931.5 RNA Sequence

  2. XR_935920.3 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060943.1 Alternate T2T-CHM13v2.0

    Range
    36073812..36078201
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007089102.1 RNA Sequence

  2. XR_007089103.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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