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PCIF1 phosphorylated CTD interacting factor 1 [ Gorilla gorilla gorilla (western lowland gorilla) ]

Gene ID: 101125215, updated on 1-Oct-2024

Summary

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Gene symbol
PCIF1
Gene description
phosphorylated CTD interacting factor 1
See related
Ensembl:ENSGGOG00000013415
Gene type
protein coding
RefSeq status
MODEL
Organism
Gorilla gorilla gorilla (sub-species: gorilla)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Gorilla
Orthologs
human mouse all
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Genomic context

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See PCIF1 in Genome Data Viewer
Location:
chromosome: 21
Exon count:
18
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mGorGor1-v2.0_pri (GCF_029281585.2) 21 NC_073245.2 (58162953..58176964)
RS_2023_04 previous assembly NHGRI_mGorGor1-v1.1-0.2.freeze_pri (GCF_029281585.1) 20 NC_073244.1 (56954812..56968841)

Chromosome 21 - NC_073245.2Genomic Context describing neighboring genes Neighboring gene spermatogenesis associated 25 Neighboring gene neuralized E3 ubiquitin protein ligase 2 Neighboring gene cathepsin A Neighboring gene phospholipid transfer protein Neighboring gene zinc finger protein 335 Neighboring gene ferritin light chain-like Neighboring gene matrix metallopeptidase 9

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA polymerase II C-terminal domain binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
mRNA (2'-O-methyladenosine-N(6)-)-methyltransferase
Names
PDX1 C-terminal inhibiting factor 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_029281585.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mGorGor1-v2.0_pri Primary Assembly

Genomic

  1. NC_073245.2 Reference NHGRI_mGorGor1-v2.0_pri Primary Assembly

    Range
    58162953..58176964
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004062291.5 → XP_004062339.1  mRNA (2'-O-methyladenosine-N(6)-)-methyltransferase

    UniProtKB/TrEMBL
    G3RMD0
    Related
    ENSGGOP00000016944.1
    Conserved Domains (2) summary
    cd00201
    Location:47 → 77
    WW; Two conserved tryptophans domain; also known as the WWP or rsp5 domain; around 40 amino acids; functions as an interaction module in a diverse set of signalling proteins; binds specific proline-rich sequences but at low affinities compared to other ...
    pfam12237
    Location:446 → 616
    PCIF1_WW; Phosphorylated CTD interacting factor 1 WW domain

  2. XM_055373094.2 → XP_055229069.1  mRNA (2'-O-methyladenosine-N(6)-)-methyltransferase

    UniProtKB/TrEMBL
    G3RMD0
Nucleotide Protein
Heading Accession and Version

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