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Pold1 DNA polymerase delta 1, catalytic subunit [ Heterocephalus glaber (naked mole-rat) ]

Gene ID: 101699680, updated on 8-Mar-2024

Summary

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Gene symbol
Pold1
Gene description
DNA polymerase delta 1, catalytic subunit
See related
Ensembl:ENSHGLG00000008382
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Heterocephalus glaber
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Bathyergidae; Heterocephalus
Orthologs
human mouse all
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Genomic context

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See Pold1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
27
Annotation release Status Assembly Chr Location
102 current HetGla_female_1.0 (GCF_000247695.1) Unplaced Scaffold NW_004624832.1 (4117597..4135092, complement)

NW_004624832.1Genomic Context describing neighboring genes Neighboring gene myosin binding protein C2 Neighboring gene Spi-B transcription factor Neighboring gene nuclear receptor subfamily 1 group H member 2 Neighboring gene napsin A aspartic peptidase

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_004624832 Unplaced Scaffold Reference HetGla_female_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. FRAMA: from RNA-seq data to annotated mRNA assemblies. Bens M, et al. BMC Genomics, 2016 Jan 14. PMID 26763976, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 3'-5'-DNA exonuclease activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA-directed DNA polymerase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nucleotide binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA replication proofreading IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in DNA-templated DNA replication IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in base-excision repair, gap-filling IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in nucleotide-excision repair, DNA gap filling IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of delta DNA polymerase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
DNA polymerase delta catalytic subunit
Names
DAN polymerase delta 1, catalytic subunit
polymerase (DNA directed), delta 1, catalytic subunit
NP_001297180.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001310251.1 → NP_001297180.1  DNA polymerase delta catalytic subunit

    See identical proteins and their annotated locations for NP_001297180.1

    Status: PROVISIONAL

    Source sequence(s)
    KM486757
    UniProtKB/TrEMBL
    A0A0A7HRK1
    Related
    ENSHGLP00000011692.1, ENSHGLT00000011820.1
    Conserved Domains (4) summary
    cd05777
    Location:301 → 530
    DNA_polB_delta_exo; DEDDy 3'-5' exonuclease domain of eukaryotic DNA polymerase delta, a family-B DNA polymerase
    cd05533
    Location:576 → 971
    POLBc_delta; DNA polymerase type-B delta subfamily catalytic domain. Three DNA-dependent DNA polymerases type B (alpha, delta, and epsilon) have been identified as essential for nuclear DNA replication in eukaryotes. Presently, no direct data is available regarding ...
    PTZ00166
    Location:85 → 1097
    PTZ00166; DNA polymerase delta catalytic subunit; Provisional
    pfam14260
    Location:1009 → 1079
    zf-C4pol; C4-type zinc-finger of DNA polymerase delta

RefSeqs of Annotated Genomes: Heterocephalus glaber Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference HetGla_female_1.0 Primary Assembly

Genomic

  1. NW_004624832.1 Reference HetGla_female_1.0 Primary Assembly

    Range
    4117597..4135092 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_002389815.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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