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lncRNA:CR30055 long non-coding RNA:CR30055 [ Drosophila melanogaster (fruit fly) ]

Gene ID: 10178803, updated on 11-Sep-2024

Summary

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Official Symbol
lncRNA:CR30055provided by FlyBase
Official Full Name
long non-coding RNA:CR30055provided by FlyBase
Primary source
FLYBASE:FBgn0050055
Locus tag
Dmel_CR30055
See related
AllianceGenome:FB:FBgn0050055
Gene type
ncRNA
Organism
Drosophila melanogaster
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as
BcDNA:GM14547; CG30055; CR30055; Dmel\CR30055
Old locus tag
Dmel_CG30055
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Genomic context

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See lncRNA:CR30055 in Genome Data Viewer
Location:
49B7-49B7; 2-67 cM
Exon count:
2
Annotation release Status Assembly Chr Location
Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 2R NT_033778.4 (12589239..12591395)
Release 5.57 previous assembly Release 5 (GCF_000001215.2) 2R NT_033778.3 (8476744..8478900)

Chromosome 2R - NT_033778.4Genomic Context describing neighboring genes Neighboring gene stand still Neighboring gene Chloride channel-b Neighboring gene Sin3A Neighboring gene long non-coding RNA:CR45279 Neighboring gene long non-coding RNA:CR43909 Neighboring gene Amphiphysin

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Extensive translation of small Open Reading Frames revealed by Poly-Ribo-Seq. Aspden JL, et al. Elife, 2014 Aug 21. PMID 25144939, Free PMC Article
  2. The exon junction complex differentially marks spliced junctions. Saulière J, et al. Nat Struct Mol Biol, 2010 Oct. PMID 20818392
  3. Identification of Genes Involved in the Differentiation of R7y and R7p Photoreceptor Cells in Drosophila. Earl JB, et al. G3 (Bethesda), 2020 Nov 5. PMID 32972998, Free PMC Article
  4. Diverse and pervasive subcellular distributions for both coding and long noncoding RNAs. Wilk R, et al. Genes Dev, 2016 Mar 1. PMID 26944682, Free PMC Article
  5. Adaptation to Chronic Nutritional Stress Leads to Reduced Dependence on Microbiota in Drosophila melanogaster. Erkosar B, et al. mBio, 2017 Oct 24. PMID 29066546, Free PMC Article

See all (11) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Markers

  • lncRNA:CR30055-RB; Dmel\lncRNA:CR30055-RB; CR30055-RB; Dmel\CR30055-RB
  • lncRNA:CR30055-RC; Dmel\lncRNA:CR30055-RC; CR30055-RC; Dmel\CR30055-RC
  • lncRNA:CR30055-RD; Dmel\lncRNA:CR30055-RD; CR30055-RD; Dmel\CR30055-RD

Gene Ontology Provided by FlyBase

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NT_033778.4 Reference assembly

    Range
    12589239..12591395
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. NR_037739.2 RNA Sequence

    Status: REVIEWED

  2. NR_037740.2 RNA Sequence

    Status: REVIEWED

  3. NR_124526.1 RNA Sequence

    Status: REVIEWED

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.