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CG42740 uncharacterized protein [ Drosophila melanogaster (fruit fly) ]

Gene ID: 10178837, updated on 18-Sep-2024

Summary

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Official Symbol
CG42740provided by FlyBase
Official Full Name
uncharacterized proteinprovided by FlyBase
Primary source
FLYBASE:FBgn0261704
Locus tag
Dmel_CG42740
See related
AllianceGenome:FB:FBgn0261704
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Drosophila melanogaster
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as
Dmel\CG42740
Orthologs
all
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Genomic context

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See CG42740 in Genome Data Viewer
Location:
99F3-99F4; 3-100 cM
Exon count:
3
Annotation release Status Assembly Chr Location
Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 3R NT_033777.3 (30418767..30422971, complement)
Release 5.57 previous assembly Release 5 (GCF_000001215.2) 3R NT_033777.2 (26244489..26248693, complement)

Chromosome 3R - NT_033777.3Genomic Context describing neighboring genes Neighboring gene Ferritin 1 heavy chain homologue Neighboring gene Ferritin 2 light chain homologue Neighboring gene long non-coding RNA:CR45570 Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene mitochondrial ribosomal protein S18C Neighboring gene uncharacterized protein

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome-wide identification and characterization of tissue-specific RNA editing events in D. melanogaster and their potential role in regulating alternative splicing. Mazloomian A, et al. RNA Biol, 2015. PMID 26512413, Free PMC Article
  2. High-fidelity promoter profiling reveals widespread alternative promoter usage and transposon-driven developmental gene expression. Batut P, et al. Genome Res, 2013 Jan. PMID 22936248, Free PMC Article
  3. Landscape and evolution of tissue-specific alternative polyadenylation across Drosophila species. Sanfilippo P, et al. Genome Biol, 2017 Nov 30. PMID 29191225, Free PMC Article
  4. Transcription elongation rate has a tissue-specific impact on alternative cleavage and polyadenylation in Drosophila melanogaster. Liu X, et al. RNA, 2017 Dec. PMID 28851752, Free PMC Article
  5. The Release 6 reference sequence of the Drosophila melanogaster genome. Hoskins RA, et al. Genome Res, 2015 Mar. PMID 25589440, Free PMC Article

See all (16) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Homology

mobile_element

  • Loc: c30422913-30422742 mobile_element_type = transposon:baggins{}3517

Gene Ontology Provided by FlyBase

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
uncharacterized protein
Names
CG42740-PA
CG42740-PB
CG42740-PC

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NT_033777.3 Reference assembly

    Range
    30418767..30422971 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001300682.1 → NP_001287611.1  uncharacterized protein Dmel_CG42740, isoform C [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_001287611.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    N0ACE7

  2. NM_001202387.1 → NP_001189316.1  uncharacterized protein Dmel_CG42740, isoform A [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_001189316.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    N0ACE7

  3. NM_001202388.1 → NP_001189317.1  uncharacterized protein Dmel_CG42740, isoform B [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_001189317.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    N0ACE7
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
N0ACE7 N0ACE7

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Other Literature Sources
Molecular Biology Databases
Research Materials