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Lhx1 LIM homeobox 1 [ Mesocricetus auratus (golden hamster) ]

Gene ID: 101828732, updated on 8-Mar-2024

Summary

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Gene symbol
Lhx1
Gene description
LIM homeobox 1
See related
EnsemblRapid:ENSMAUG00000003621
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Mesocricetus auratus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Cricetinae; Mesocricetus
Also known as
Lim1; lmx2; Lim-1
Orthologs
human mouse all
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Genomic context

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See Lhx1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
6
Annotation release Status Assembly Chr Location
103 current BCM_Maur_2.0 (GCF_017639785.1) Unplaced Scaffold NW_024429191.1 (62819803..62825895, complement)
102 previous assembly MesAur1.0 (GCF_000349665.1) Unplaced Scaffold NW_004801671.1 (2935967..2940664)

NW_024429191.1Genomic Context describing neighboring genes Neighboring gene acetyl-CoA carboxylase alpha Neighboring gene 10 kDa heat shock protein, mitochondrial-like Neighboring gene apoptosis antagonizing transcription factor Neighboring gene uncharacterized LOC121141449 Neighboring gene mitochondrial rRNA methyltransferase 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Pancreatic beta cells express a diverse set of homeobox genes. Rudnick A, et al. Proc Natl Acad Sci U S A, 1994 Dec 6. PMID 7991607, Free PMC Article
  2. De novo assembly, annotation, and characterization of the whole brain transcriptome of male and female Syrian hamsters. McCann KE, et al. Sci Rep, 2017 Jan 10. PMID 28071753, Free PMC Article
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II transcription regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in neuron differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LIM/homeobox protein Lhx1
Names
Homeobox protein LMX-2
Homeobox protein Lim-1
LIM homeobox protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001281609.1 → NP_001268538.1  LIM/homeobox protein Lhx1

    See identical proteins and their annotated locations for NP_001268538.1

    Status: PROVISIONAL

    Source sequence(s)
    X81407
    UniProtKB/Swiss-Prot
    P36199, P63008
    UniProtKB/TrEMBL
    A0A1U7Q2I4
    Related
    ENSMAUP00000003336.1, ENSMAUT00000004558.2
    Conserved Domains (4) summary
    cd09367
    Location:4 → 55
    LIM1_Lhx1_Lhx5; The first LIM domain of Lhx1 (also known as Lim1) and Lhx5
    cd09375
    Location:63 → 118
    LIM2_Lhx1_Lhx5; The second LIM domain of Lhx1 (also known as Lim1) and Lhx5
    PRK14086
    Location:263 → 382
    dnaA; chromosomal replication initiator protein DnaA
    pfam00046
    Location:183 → 237
    Homeobox; Homeobox domain

RefSeqs of Annotated Genomes: Mesocricetus auratus Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference BCM_Maur_2.0 Primary Assembly

Genomic

  1. NW_024429191.1 Reference BCM_Maur_2.0 Primary Assembly

    Range
    62819803..62825895 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040747898.1 → XP_040603832.1  LIM/homeobox protein Lhx1 isoform X1

    Related
    ENSMAUP00000041294.1, ENSMAUT00000039061.1
    Conserved Domains (3) summary
    cd09375
    Location:95 → 150
    LIM2_Lhx1_Lhx5; The second LIM domain of Lhx1 (also known as Lim1) and Lhx5
    PRK14086
    Location:295 → 414
    dnaA; chromosomal replication initiator protein DnaA
    cd00086
    Location:213 → 271
    homeodomain; Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P63008.1 GenPept UniProtKB/Swiss-Prot:P63008

Gene LinkOut

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