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birc6-as2 birc6 antisense RNA 2 [ Danio rerio (zebrafish) ]

Gene ID: 101885944, updated on 9-Dec-2024

Summary

Official Symbol
birc6-as2provided by ZNC
Official Full Name
birc6 antisense RNA 2provided by ZNC
Primary source
ZFIN:ZDB-LNCRNAG-131127-227
See related
Ensembl:ENSDARG00000097706 AllianceGenome:ZFIN:ZDB-LNCRNAG-131127-227
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
megamind; linc-birc6; si:dkey-11a7.3
Summary
Acts upstream of or within brain development. Is expressed in brain and eye. Orthologous to human BIRC6-AS2 (BIRC6 antisense RNA 2). [provided by Alliance of Genome Resources, Dec 2024]
Orthologs
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Genomic context

See birc6-as2 in Genome Data Viewer
Location:
chromosome: 17
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 17 NC_007128.7 (22687172..22689787, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 17 NC_007128.6 (22667336..22669951, complement)

Chromosome 17 - NC_007128.7Genomic Context describing neighboring genes Neighboring gene exonuclease 1 Neighboring gene Yip1 domain family, member 4 Neighboring gene baculoviral IAP repeat containing 6 Neighboring gene tetratricopeptide repeat domain 27 Neighboring gene microRNA 456 Neighboring gene latent transforming growth factor beta binding protein 1

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_125794.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    JQ681268
    Related
    ENSDART00000154316.2

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007128.7 Reference GRCz11 Primary Assembly

    Range
    22687172..22689787 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018394987.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    70510..73127 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)