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LINC01875 long intergenic non-protein coding RNA 1875 [ Homo sapiens (human) ]

Gene ID: 101927362, updated on 22-Oct-2024

Summary

Official Symbol
LINC01875provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1875provided by HGNC
Primary source
HGNC:HGNC:52694
See related
Ensembl:ENSG00000225942 AllianceGenome:HGNC:52694
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

See LINC01875 in Genome Data Viewer
Location:
2p25.3
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (545805..546667)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (544309..545171)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (545805..546667)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene MED14-independent group 3 enhancer GRCh37_chr2:495062-496261 Neighboring gene uncharacterized LOC100996637 Neighboring gene long intergenic non-protein coding RNA 1874 Neighboring gene NANOG hESC enhancer GRCh37_chr2:513913-514495 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:527316-527838 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:527839-528360 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:551220-551720 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:551721-552221 Neighboring gene uncharacterized LOC105373352 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:562669-563218 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr2:582585-583784 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr2:602328-603527 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr2:608557-609756 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:620290-620879 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:660609-661184 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:673893-674394 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:674395-674894 Neighboring gene H3K27ac hESC enhancer GRCh37_chr2:676681-677446 Neighboring gene transmembrane protein 18 Neighboring gene TMEM18 divergent transcript

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_146470.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC093326
    Related
    ENST00000454477.2

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

    Range
    545805..546667
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060926.1 Alternate T2T-CHM13v2.0

    Range
    544309..545171
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)