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LINC02353 long intergenic non-protein coding RNA 2353 [ Homo sapiens (human) ]

Gene ID: 101927363, updated on 10-Dec-2024

Summary

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Official Symbol
LINC02353provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2353provided by HGNC
Primary source
HGNC:HGNC:53275
See related
Ensembl:ENSG00000251329 AllianceGenome:HGNC:53275
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LINC02353 in Genome Data Viewer
Location:
4p15.1
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 4 NC_000004.12 (32351038..32353220)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 4 NC_060928.1 (32325889..32328071)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 4 NC_000004.11 (32352660..32354842)

Chromosome 4 - NC_000004.12Genomic Context describing neighboring genes Neighboring gene long intergenic non-protein coding RNA 2506 Neighboring gene uncharacterized LOC124900845 Neighboring gene uncharacterized LOC102723846 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr4:32398011-32398729 Neighboring gene uncharacterized LOC107986223 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_78431 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_78443 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr4:32685598-32686457 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:32749967-32750466 Neighboring gene MPRA-validated peak5018 silencer Neighboring gene uncharacterized LOC124900831

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Tissue-specific circular RNA induction during human fetal development
  • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
  • BioProject: PRJNA270632
  • Publication: PMID 26076956
  • Analysis date: Mon Apr 2 22:54:59 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_134672.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC019179, BC043520
    Related
    ENST00000515181.2

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000004.12 Reference GRCh38.p14 Primary Assembly

    Range
    32351038..32353220
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060928.1 Alternate T2T-CHM13v2.0

    Range
    32325889..32328071
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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