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LOC101927389 uncharacterized LOC101927389 [ Homo sapiens (human) ]

Gene ID: 101927389, updated on 22-Oct-2024

Summary

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Gene symbol
LOC101927389
Gene description
uncharacterized LOC101927389
See related
Ensembl:ENSG00000289016
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC101927389 in Genome Data Viewer
Location:
17q22
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 17 NC_000017.11 (55612960..55648632)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 17 NC_060941.1 (56489092..56529688)

Chromosome 17 - NC_000017.11Genomic Context describing neighboring genes Neighboring gene peptidase D pseudogene Neighboring gene MED14-independent group 3 enhancer GRCh37_chr17:53653375-53654574 Neighboring gene uncharacterized LOC102724732 Neighboring gene Sharpr-MPRA regulatory region 8574 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 8735 Neighboring gene MPRA-validated peak2903 silencer Neighboring gene uncharacterized LOC124904099 Neighboring gene transmembrane protein 100

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh38)

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000017.11 Reference GRCh38.p14 Primary Assembly

    Range
    55612960..55648632
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_243722.5 RNA Sequence

    Related
    ENST00000847291.1

  2. XR_934870.3 RNA Sequence

    Related
    ENST00000847289.1

  3. XR_001752944.2 RNA Sequence

    Related
    ENST00000847292.1

  4. XR_934869.3 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060941.1 Alternate T2T-CHM13v2.0

    Range
    56489092..56529688
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007088006.1 RNA Sequence

  2. XR_007088007.1 RNA Sequence

  3. XR_007088004.1 RNA Sequence

  4. XR_007088005.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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Research Materials