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EFHD2-AS1 EFHD2 antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 101927441, updated on 26-Oct-2024

Summary

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Official Symbol
EFHD2-AS1provided by HGNC
Official Full Name
EFHD2 antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:55801
See related
AllianceGenome:HGNC:55801
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Biased expression in testis (RPKM 1.8) and bone marrow (RPKM 0.2) See more
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Genomic context

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See EFHD2-AS1 in Genome Data Viewer
Location:
1p36.21
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (15402979..15412368, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (14847732..14857117, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (15729475..15738864, complement)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene forkhead associated phosphopeptide binding domain 1 Neighboring gene uncharacterized LOC124903852 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:15651115-15651879 Neighboring gene uncharacterized LOC124903851 Neighboring gene FHAD1 antisense RNA 1 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 234 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr1:15678468-15679667 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 235 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:15691409-15691909 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:15710597-15711244 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:15711245-15711892 Neighboring gene ReSE screen-validated silencer GRCh37_chr1:15723563-15723730 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:15736144-15737006 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 302 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:15742803-15743302 Neighboring gene Sharpr-MPRA regulatory region 12140 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 303 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:15752556-15753456 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:15753457-15754355 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:15757008-15757508 Neighboring gene EF-hand domain family member D2 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:15760169-15760668 Neighboring gene uncharacterized LOC105376767 Neighboring gene chymotrypsin C Neighboring gene chymotrypsin like elastase 2A

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_183705.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL031283

  2. NR_183706.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL031283

  3. NR_183707.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL031283

  4. NR_183708.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL031283

  5. NR_183709.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL031283

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    15402979..15412368 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    14847732..14857117 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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