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LINC01927 long intergenic non-protein coding RNA 1927 [ Homo sapiens (human) ]

Gene ID: 101927651, updated on 10-Dec-2024

Summary

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Official Symbol
LINC01927provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1927provided by HGNC
Primary source
HGNC:HGNC:52749
See related
AllianceGenome:HGNC:52749
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Biased expression in testis (RPKM 3.3), endometrium (RPKM 0.4) and 6 other tissues See more
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Genomic context

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See LINC01927 in Genome Data Viewer
Location:
18q23
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 18 NC_000018.10 (76622781..76639011, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 18 NC_060942.1 (76851153..76867419, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 18 NC_000018.9 (74334738..74350968, complement)

Chromosome 18 - NC_000018.10Genomic Context describing neighboring genes Neighboring gene zinc finger protein 516 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 9557 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 13510 Neighboring gene ZNF516 divergent transcript Neighboring gene Sharpr-MPRA regulatory region 8201 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr18:74240354-74240994 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr18:74240995-74241633 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr18:74241634-74242273 Neighboring gene long intergenic non-protein coding RNA 908 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr18:74323725-74324238 Neighboring gene long intergenic non-protein coding RNA 683 Neighboring gene uncharacterized LOC107985151 Neighboring gene NANOG hESC enhancer GRCh37_chr18:74370664-74371165 Neighboring gene uncharacterized LOC105372212 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr18:74398425-74399381

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Tissue-specific circular RNA induction during human fetal development
  • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
  • BioProject: PRJNA270632
  • Publication: PMID 26076956
  • Analysis date: Mon Apr 2 22:54:59 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_110784.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC034110

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000018.10 Reference GRCh38.p14 Primary Assembly

    Range
    76622781..76639011 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060942.1 Alternate T2T-CHM13v2.0

    Range
    76851153..76867419 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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