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PABPC1L2B-AS1 PABPC1L2B antisense RNA 1 (head to head) [ Homo sapiens (human) ]

Gene ID: 101928345, updated on 10-Dec-2024

Summary

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Official Symbol
PABPC1L2B-AS1provided by HGNC
Official Full Name
PABPC1L2B antisense RNA 1 (head to head)provided by HGNC
Primary source
HGNC:HGNC:50345
See related
Ensembl:ENSG00000226725 AllianceGenome:HGNC:50345
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Biased expression in prostate (RPKM 3.5), brain (RPKM 1.0) and 3 other tissues See more
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Genomic context

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See PABPC1L2B-AS1 in Genome Data Viewer
Location:
Xq13.1-q13.2
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) X NC_000023.11 (72998388..73002856, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) X NC_060947.1 (71431896..71436357, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) X NC_000023.10 (72218227..72222695, complement)

Chromosome X - NC_000023.11Genomic Context describing neighboring genes Neighboring gene DMRT like family C1 Neighboring gene family with sequence similarity 236 member A Neighboring gene family with sequence similarity 226 member A Neighboring gene H3K4me1 hESC enhancer GRCh37_chrX:72179367-72179868 Neighboring gene poly(A) binding protein cytoplasmic 1 like 2B Neighboring gene ReSE screen-validated silencer GRCh37_chrX:72288168-72288379 Neighboring gene poly(A) binding protein cytoplasmic 1 like 2A

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Tissue-specific circular RNA induction during human fetal development
  • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
  • BioProject: PRJNA270632
  • Publication: PMID 26076956
  • Analysis date: Mon Apr 2 22:54:59 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_110398.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC234776
    Related
    ENST00000416989.2

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000023.11 Reference GRCh38.p14 Primary Assembly

    Range
    72998388..73002856 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060947.1 Alternate T2T-CHM13v2.0

    Range
    71431896..71436357 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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