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LOC101928437 uncharacterized LOC101928437 [ Homo sapiens (human) ]

Gene ID: 101928437, updated on 10-Dec-2024

Summary

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Gene symbol
LOC101928437
Gene description
uncharacterized LOC101928437
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC101928437 in Genome Data Viewer
Location:
Xq23
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) X NC_000023.11 (113042727..113520614)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) X NC_060947.1 (111494674..111973428)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) X NC_000023.10 (112285955..112763885)

Chromosome X - NC_000023.11Genomic Context describing neighboring genes Neighboring gene NANOG hESC enhancer GRCh37_chrX:112180402-112180965 Neighboring gene RNA, U6 small nuclear 1015, pseudogene Neighboring gene uncharacterized LOC124905274 Neighboring gene H3K27ac hESC enhancer GRCh37_chrX:112331023-112331523 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chrX:112351918-112352418 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chrX:112352419-112352919 Neighboring gene MED14-independent group 3 enhancer GRCh37_chrX:112516938-112518137 Neighboring gene H3K27ac hESC enhancer GRCh37_chrX:112549954-112550454 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chrX:112644353-112645154 Neighboring gene H3K27ac hESC enhancer GRCh37_chrX:112646849-112647350 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chrX:112782802-112783585 Neighboring gene peptidylprolyl isomerase H pseudogene 2 Neighboring gene X active specific transcript

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Tissue-specific circular RNA induction during human fetal development
  • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
  • BioProject: PRJNA270632
  • Publication: PMID 26076956
  • Analysis date: Mon Apr 2 22:54:59 2018

Bibliography

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Related articles in PubMed

  1. A New Role for LOC101928437 in Non-Syndromic Intellectual Disability: Findings from a Family-Based Association Test. Zhou S, et al. PLoS One, 2015. PMID 26287547, Free PMC Article

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. The results suggest that LOC101928437 is a novel candidate gene for Non-Syndromic Intellectual Disability in Han Chinese individuals of the Qinba region of China.
    Title: A New Role for LOC101928437 in Non-Syndromic Intellectual Disability: Findings from a Family-Based Association Test.
Submit: New GeneRIF Correction

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_110399.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC233289, AK127862, AL023877

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000023.11 Reference GRCh38.p14 Primary Assembly

    Range
    113042727..113520614
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060947.1 Alternate T2T-CHM13v2.0

    Range
    111494674..111973428
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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