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LOC101928933 uncharacterized LOC101928933 [ Homo sapiens (human) ]

Gene ID: 101928933, updated on 17-Sep-2024

Summary

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Gene symbol
LOC101928933
Gene description
uncharacterized LOC101928933
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Biased expression in testis (RPKM 1.2), fat (RPKM 0.2) and 10 other tissues See more
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Genomic context

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See LOC101928933 in Genome Data Viewer
Location:
1q25.2
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (179926171..179952478, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (179274994..179310388, complement)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene torsin 1A interacting protein 2 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2154 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:179850786-179851324 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:179851325-179851862 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2157 Neighboring gene torsin 1A interacting protein 1 Neighboring gene ReSE screen-validated silencer GRCh37_chr1:179877971-179878173 Neighboring gene RNA, 7SL, cytoplasmic 230, pseudogene Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2158 Neighboring gene H3K27ac hESC enhancer GRCh37_chr1:179923641-179924142 Neighboring gene centrosomal protein 350 Neighboring gene ribosomal protein SA pseudogene 16 Neighboring gene ribosomal protein S24 pseudogene 5

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh38)

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    179926171..179952478 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_241158.4 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    179274994..179310388 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007070897.1 RNA Sequence

  2. XR_007070898.1 RNA Sequence

  3. XR_007070899.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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