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CTD-2194D22.4 uncharacterized LOC101929081 [ Homo sapiens (human) ]

Gene ID: 101929081, updated on 17-Sep-2024

Summary

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Gene symbol
CTD-2194D22.4
Gene description
uncharacterized LOC101929081
See related
Ensembl:ENSG00000249326
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See CTD-2194D22.4 in Genome Data Viewer
Location:
5p15.33
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 5 NC_000005.10 (1887331..1900493)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 5 NC_060929.1 (1803981..1817118)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 5 NC_000005.9 (1887445..1900607)

Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124901164 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:1865987-1866486 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:1875699-1876211 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:1876212-1876724 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:1883903-1884755 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:1885305-1885838 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:1889419-1890219 Neighboring gene IRX4 antisense RNA 1 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:1919083-1919896 Neighboring gene iroquois homeobox 4 Neighboring gene keratin-associated protein 5-5-like Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:1930660-1931240 Neighboring gene uncharacterized LOC105374618 Neighboring gene meiotic recombination hotspot 5A Neighboring gene NANOG hESC enhancer GRCh37_chr5:1944459-1944980 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:1945776-1946394 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:1948847-1949348 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr5:1950332-1951531 Neighboring gene Sharpr-MPRA regulatory region 501 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:1961828-1962566 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:1964219-1964719 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:1973793-1974292 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15890 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:2067819-2068402 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:2068403-2068984 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:2075638-2076138 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:2077789-2078290 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_83860 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_83872 Neighboring gene VISTA enhancer hs633 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr5:2136525-2137724 Neighboring gene NANOG hESC enhancer GRCh37_chr5:2144015-2144548 Neighboring gene H3K27ac hESC enhancer GRCh37_chr5:2145193-2145694 Neighboring gene H3K27ac hESC enhancer GRCh37_chr5:2145695-2146194 Neighboring gene H3K27ac hESC enhancer GRCh37_chr5:2146889-2147388 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_83887 Neighboring gene H3K27ac hESC enhancer GRCh37_chr5:2157739-2158239 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_83908 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:2175812-2176312 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_83940 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:2191782-2192282 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:2192283-2192783 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_83970 Neighboring gene VISTA enhancer hs1327 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:2212387-2213238 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:2260271-2261061 Neighboring gene uncharacterized LOC124901166 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr5:2269269-2269796 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr5:2269797-2270323

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Evaluating genetic risk for prostate cancer among Japanese and Latinos. Cheng I, et al. Cancer Epidemiol Biomarkers Prev, 2012 Nov. PMID 22923026, Free PMC Article
  2. Genome-wide association study identifies five new susceptibility loci for prostate cancer in the Japanese population. Takata R, et al. Nat Genet, 2010 Sep. PMID 20676098
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

EBI GWAS Catalog

Description
Evaluating genetic risk for prostate cancer among Japanese and Latinos.
EBI GWAS Catalog
Genome-wide association study identifies five new susceptibility loci for prostate cancer in the Japanese population.
EBI GWAS Catalog

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_109912.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC025183, BC039383, BI463559
    Related
    ENST00000514569.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000005.10 Reference GRCh38.p14 Primary Assembly

    Range
    1887331..1900493
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060929.1 Alternate T2T-CHM13v2.0

    Range
    1803981..1817118
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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