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LINC02064 long intergenic non-protein coding RNA 2064 [ Homo sapiens (human) ]

Gene ID: 101929681, updated on 10-Dec-2024

Summary

Official Symbol
LINC02064provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2064provided by HGNC
Primary source
HGNC:HGNC:52909
See related
Ensembl:ENSG00000248391 AllianceGenome:HGNC:52909
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Restricted expression toward testis (RPKM 3.6) See more
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Genomic context

See LINC02064 in Genome Data Viewer
Location:
5p13.3
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 5 NC_000005.10 (29380070..29395976, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 5 NC_060929.1 (29494216..29510116, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 5 NC_000005.9 (29380177..29396083, complement)

Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105374699 Neighboring gene basal body orientation factor 1 pseudogene Neighboring gene long intergenic non-protein coding RNA 2109 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:29191372-29191918 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:29191919-29192465 Neighboring gene uncharacterized LOC105374702 Neighboring gene aurora kinase A interacting protein 1 pseudogene

Genomic regions, transcripts, and products

Expression

  • Project title: Tissue-specific circular RNA induction during human fetal development
  • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
  • BioProject: PRJNA270632
  • Publication: PMID 26076956
  • Analysis date: Mon Apr 2 22:54:59 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_104628.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC010340, AW629434, BX118468, DB068452
    Related
    ENST00000506492.6

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000005.10 Reference GRCh38.p14 Primary Assembly

    Range
    29380070..29395976 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060929.1 Alternate T2T-CHM13v2.0

    Range
    29494216..29510116 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)