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LINC02391 long intergenic non-protein coding RNA 2391 [ Homo sapiens (human) ]

Gene ID: 101930023, updated on 10-Dec-2024

Summary

Official Symbol
LINC02391provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2391provided by HGNC
Primary source
HGNC:HGNC:53318
See related
Ensembl:ENSG00000277851 AllianceGenome:HGNC:53318
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

See LINC02391 in Genome Data Viewer
Location:
12q22
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 12 NC_000012.12 (92259263..92363832, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 12 NC_060936.1 (92234076..92341352, complement)

Chromosome 12 - NC_000012.12Genomic Context describing neighboring genes Neighboring gene long intergenic non-protein coding RNA 1619 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6721 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6722 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6723 Neighboring gene H3K27ac hESC enhancer GRCh37_chr12:92538603-92539139 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6725 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6726 Neighboring gene BTG1 divergent transcript Neighboring gene ribosomal protein L21 pseudogene 106 Neighboring gene BTG anti-proliferation factor 1 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6727 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6729 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6728 Neighboring gene H3K27ac hESC enhancer GRCh37_chr12:92718856-92719356 Neighboring gene H3K27ac hESC enhancer GRCh37_chr12:92719357-92719857 Neighboring gene NANOG hESC enhancer GRCh37_chr12:92725117-92725618 Neighboring gene uncharacterized LOC105369902 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6730 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6731 Neighboring gene CRISPRi-validated cis-regulatory element chr12.2878 Neighboring gene uncharacterized LOC107984467 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6732 Neighboring gene CRISPRi-validated cis-regulatory element chr12.2880 Neighboring gene CRISPRi-validated cis-regulatory element chr12.2881 Neighboring gene CLLU1 antisense RNA 1 Neighboring gene chronic lymphocytic leukemia up-regulated 1

Genomic regions, transcripts, and products

Expression

  • Project title: Tissue-specific circular RNA induction during human fetal development
  • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
  • BioProject: PRJNA270632
  • Publication: PMID 26076956
  • Analysis date: Mon Apr 2 22:54:59 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000012.12 Reference GRCh38.p14 Primary Assembly

    Range
    92259263..92363832 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007063404.1 RNA Sequence

    Related
    ENST00000847440.1
  2. XR_007063403.1 RNA Sequence

    Related
    ENST00000847444.1
  3. XR_945205.3 RNA Sequence

    Related
    ENST00000847455.1

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060936.1 Alternate T2T-CHM13v2.0

    Range
    92234076..92341352 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007082920.1 RNA Sequence

  2. XR_007082919.1 RNA Sequence

  3. XR_007082921.1 RNA Sequence

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