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lrrk1 leucine-rich repeat kinase 1 [ Xiphophorus maculatus (southern platyfish) ]

Gene ID: 102236655, updated on 10-Mar-2024

Summary

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Gene symbol
lrrk1
Gene description
leucine-rich repeat kinase 1
See related
Ensembl:ENSXMAG00000001400
Gene type
protein coding
RefSeq status
MODEL
Organism
Xiphophorus maculatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Xiphophorus
Orthologs
human zebrafish all
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Genomic context

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See lrrk1 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
38
Annotation release Status Assembly Chr Location
102 current X_maculatus-5.0-male (GCF_002775205.1) 4 NC_036446.1 (33388265..33438818)
101 previous assembly Xiphophorus_maculatus-4.4.2 (GCF_000241075.1) Unplaced Scaffold NW_005372260.1 (1450879..1495999)

Chromosome 4 - NC_036446.1Genomic Context describing neighboring genes Neighboring gene ankyrin repeat and SOCS box containing 7 Neighboring gene aldehyde dehydrogenase 1 family, member A3 Neighboring gene chondroitin sulfate synthase 1 Neighboring gene selenoprotein S

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein phosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
leucine-rich repeat serine/threonine-protein kinase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xiphophorus maculatus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference X_maculatus-5.0-male Primary Assembly

Genomic

  1. NC_036446.1 Reference X_maculatus-5.0-male Primary Assembly

    Range
    33388265..33438818
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023331874.1 → XP_023187642.1  leucine-rich repeat serine/threonine-protein kinase 1

    UniProtKB/TrEMBL
    A0A3B5R1X1, M3ZGT1
    Related
    ENSXMAP00000037558.1, ENSXMAT00000041494.1
    Conserved Domains (7) summary
    COG4886
    Location:297 → 636
    LRR; Leucine-rich repeat (LRR) protein [Transcription]
    sd00033
    Location:326 → 348
    LRR_RI; leucine-rich repeat [structural motif]
    sd00045
    Location:155 → 181
    ANK; ANK repeat [structural motif]
    pfam12796
    Location:125 → 219
    Ank_2; Ankyrin repeats (3 copies)
    pfam16095
    Location:841 → 1033
    COR; C-terminal of Roc, COR, domain
    cl21453
    Location:1249 → 1525
    PKc_like; Protein Kinases, catalytic domain
    cl21455
    Location:633 → 809
    P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases
Nucleotide Protein Strain
Heading Accession and Version

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