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SOX5 SRY-box transcription factor 5 [ Tupaia chinensis (Chinese tree shrew) ]

Gene ID: 102469054, updated on 10-Mar-2024

Summary

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Gene symbol
SOX5
Gene description
SRY-box transcription factor 5
Locus tag
TREES_T100009639
Gene type
protein coding
RefSeq status
MODEL
Organism
Tupaia chinensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Scandentia; Tupaiidae; Tupaia
Orthologs
human mouse all
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Genomic context

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See SOX5 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
26
Annotation release Status Assembly Chr Location
102 current TupChi_1.0 (GCF_000334495.1) Unplaced Scaffold NW_006159458.1 (6964634..7982966)

NW_006159458.1Genomic Context describing neighboring genes Neighboring gene acidic leucine-rich nuclear phosphoprotein 32 family member B-like Neighboring gene branched chain amino acid transaminase 1 Neighboring gene small nucleolar RNA SNORA61 Neighboring gene vacuolar protein sorting-associated protein 72 homolog pseudogene Neighboring gene uncharacterized LOC102471320 Neighboring gene U6 spliceosomal RNA Neighboring gene acidic leucine-rich nuclear phosphoprotein 32 family member A-like Neighboring gene uncharacterized LOC102470895 Neighboring gene uncharacterized LOC102468775 Neighboring gene voltage-dependent anion-selective channel protein 1 pseudogene Neighboring gene ATP synthase F(0) complex subunit C3, mitochondrial pseudogene

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006159458 Unplaced Scaffold Reference TupChi_1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell fate commitment IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of chondrocyte differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor SOX-5
Names
SRY-box 5
Transcription factor SOX-5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Tupaia chinensis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference TupChi_1.0

Genomic

  1. NW_006159458.1 Reference TupChi_1.0

    Range
    6964634..7982966
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_027771080.1 → XP_027626881.1  transcription factor SOX-5 isoform X2

  2. XM_027771084.1 → XP_027626885.1  transcription factor SOX-5 isoform X2

  3. XM_027771082.1 → XP_027626883.1  transcription factor SOX-5 isoform X2

  4. XM_027771093.1 → XP_027626894.1  transcription factor SOX-5 isoform X2

  5. XM_027771092.1 → XP_027626893.1  transcription factor SOX-5 isoform X2

  6. XM_027771094.1 → XP_027626895.1  transcription factor SOX-5 isoform X4

  7. XM_014587346.2 → XP_014442832.1  transcription factor SOX-5 isoform X5

    Conserved Domains (1) summary
    cd01388
    Location:471 → 542
    SOX-TCF_HMG-box; SOX-TCF_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and ...

  8. XM_014587330.2 → XP_014442816.1  transcription factor SOX-5 isoform X1

    Conserved Domains (1) summary
    cd01388
    Location:555 → 626
    SOX-TCF_HMG-box; SOX-TCF_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and ...

  9. XM_014587342.2 → XP_014442828.1  transcription factor SOX-5 isoform X3

    Conserved Domains (1) summary
    cd01388
    Location:520 → 591
    SOX-TCF_HMG-box; SOX-TCF_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and ...

  10. XM_027771087.1 → XP_027626888.1  transcription factor SOX-5 isoform X2

  11. XM_006140307.3 → XP_006140369.1  transcription factor SOX-5 isoform X6

    Conserved Domains (1) summary
    cd01388
    Location:295 → 366
    SOX-TCF_HMG-box; SOX-TCF_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and ...

  12. XM_006140308.3 → XP_006140370.1  transcription factor SOX-5 isoform X7

    Conserved Domains (1) summary
    cd01388
    Location:261 → 332
    SOX-TCF_HMG-box; SOX-TCF_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and ...
Nucleotide Protein
Heading Accession and Version

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