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LINC02060 long intergenic non-protein coding RNA 2060 [ Homo sapiens (human) ]

Gene ID: 102546226, updated on 22-Oct-2024

Summary

Official Symbol
LINC02060provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2060provided by HGNC
Primary source
HGNC:HGNC:52904
See related
Ensembl:ENSG00000245526 AllianceGenome:HGNC:52904
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

See LINC02060 in Genome Data Viewer
Location:
5q14.3
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 5 NC_000005.10 (88408982..88439090, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 5 NC_060929.1 (88890056..88920148, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 5 NC_000005.9 (87704799..87734907, complement)

Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene TMEM161B divergent transcript Neighboring gene small nucleolar RNA SNORA70 Neighboring gene RPS3A pseudogene 22 Neighboring gene CRE1 CAGE-defined tissue-specific enhancer Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22756 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22757 Neighboring gene MIR9-2 host gene Neighboring gene H3 histone pseudogene 23 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:87955193-87955706 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:87955707-87956218 Neighboring gene NANOG hESC enhancer GRCh37_chr5:87956815-87957640 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr5:87959465-87960288 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr5:87960289-87961111 Neighboring gene microRNA 9-2

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_105021.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC091826, BC043237
    Related
    ENST00000506041.2

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000005.10 Reference GRCh38.p14 Primary Assembly

    Range
    88408982..88439090 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060929.1 Alternate T2T-CHM13v2.0

    Range
    88890056..88920148 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)