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LOC102548286 peroxisomal biogenesis factor 19-like [ Rattus norvegicus (Norway rat) ]

Gene ID: 102548286, updated on 2-Nov-2024

Summary

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Symbol
LOC102548286provided by RGD
Full Name
peroxisomal biogenesis factor 19-likeprovided by RGD
Primary source
RGD:7538513
See related
AllianceGenome:RGD:7538513
Gene type
pseudo
RefSeq status
MODEL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary
Predicted to be involved in peroxisome organization. Predicted to be located in peroxisomal membrane. [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in Muscle (RPKM 416.6), Heart (RPKM 397.2) and 9 other tissues See more
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Genomic context

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See LOC102548286 in Genome Data Viewer
Location:
18q12.2
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 18 NC_086036.1 (71454019..71457051, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 18 NC_051353.1 (69178961..69181127, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 18 NC_005117.4 (71731223..71733389, complement)

Chromosome 18 - NC_086036.1Genomic Context describing neighboring genes Neighboring gene SMAD family member 7 Neighboring gene cap binding complex dependent translation initiation factor Neighboring gene uncharacterized LOC120098120 Neighboring gene uncharacterized LOC102548225 Neighboring gene uncharacterized LOC120098205 Neighboring gene uncharacterized LOC134483052

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. Two different targeting signals direct human peroxisomal membrane protein 22 to peroxisomes. Brosius U, et al. J Biol Chem, 2002 Jan 4. PMID 11590176
  2. PEX19 binds multiple peroxisomal membrane proteins, is predominantly cytoplasmic, and is required for peroxisome membrane synthesis. Sacksteder KA, et al. J Cell Biol, 2000 Mar 6. PMID 10704444, Free PMC Article
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RGD

Process Evidence Code Pubs
involved_in peroxisome organization IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in peroxisomal membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
peroxisomal biogenesis factor 19

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086036.1 Reference GRCr8

    Range
    71454019..71457051 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_063277706.1 → XP_063133776.1  peroxisomal biogenesis factor 19

Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases
Research Materials