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Zfp108 zinc finger protein 108 [ Rattus norvegicus (Norway rat) ]

Gene ID: 102548503, updated on 27-Nov-2024

Summary

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Symbol
Zfp108provided by RGD
Full Name
zinc finger protein 108provided by RGD
Primary source
RGD:1564214
See related
EnsemblRapid:ENSRNOG00000032625 AllianceGenome:RGD:1564214
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
RGD1564214
Summary
Predicted to enable metal ion binding activity. Predicted to be involved in regulation of DNA-templated transcription. Predicted to be located in nucleus. [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in Brain (RPKM 34.5), Kidney (RPKM 28.5) and 9 other tissues See more
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Genomic context

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See Zfp108 in Genome Data Viewer
Location:
1q21
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 1 NC_086019.1 (88948365..88956394)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 1 NC_051336.1 (79820445..79827564)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 1 NC_005100.4 (81093642..81100348)

Chromosome 1 - NC_086019.1Genomic Context describing neighboring genes Neighboring gene zinc finger protein 235, pseudogene 1 Neighboring gene high mobility group box 1 like 1 Neighboring gene zinc finger protein 61 Neighboring gene intraflagellar transport protein 81 homolog Neighboring gene zinc finger protein 94

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • AC118165.1

Gene Ontology Provided by RGD

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
  
involved_in regulation of transcription by RNA polymerase II IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
uncharacterized protein LOC102548503; zinc finger protein 235
Names
zinc finger protein 235-like

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001432836.1 → NP_001419765.1  uncharacterized protein LOC102548503 isoform a

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000001

  2. NM_001432837.1 → NP_001419766.1  uncharacterized protein LOC102548503 isoform b

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000001
    UniProtKB/TrEMBL
    A0A8I6AF39

  3. NM_001432838.1 → NP_001419767.1  uncharacterized protein LOC102548503 isoform b

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000001
    UniProtKB/TrEMBL
    A0A8I6AF39

  4. NM_001432839.1 → NP_001419768.1  uncharacterized protein LOC102548503 isoform c

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000001
    UniProtKB/TrEMBL
    A0A8I6GIL0, A6J8X3

  5. NM_001432840.1 → NP_001419769.1  uncharacterized protein LOC102548503 isoform d

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000001
    UniProtKB/TrEMBL
    A6J8X4

  6. NM_001432841.1 → NP_001419770.1  uncharacterized protein LOC102548503 isoform d

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000001
    UniProtKB/TrEMBL
    A6J8X4

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086019.1 Reference GRCr8

    Range
    88948365..88956394
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017590009.3 → XP_017445498.2  zinc finger protein 235 isoform X1

    Conserved Domains (4) summary
    COG5048
    Location:342 → 679
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:542 → 562
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam01352
    Location:8 → 47
    KRAB; KRAB box
    pfam13465
    Location:303 → 327
    zf-H2C2_2; Zinc-finger double domain

  2. XM_039093429.2 → XP_038949357.1  zinc finger protein 235 isoform X2

    Related
    ENSRNOP00000026088.7, ENSRNOT00000026088.7
    Conserved Domains (4) summary
    COG5048
    Location:339 → 676
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:539 → 559
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam01352
    Location:8 → 48
    KRAB; KRAB box
    pfam13465
    Location:300 → 324
    zf-H2C2_2; Zinc-finger double domain

  3. XM_063277602.1 → XP_063133672.1  zinc finger protein 235 isoform X3

    Related
    ENSRNOP00000090073.1, ENSRNOT00000099999.2
Nucleotide Protein Strain
Heading Accession and Version

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