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LOC102550580 uncharacterized LOC102550580 [ Rattus norvegicus (Norway rat) ]

Gene ID: 102550580, updated on 17-Aug-2024

Summary

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Symbol
LOC102550580provided by RGD
Full Name
uncharacterized LOC102550580provided by RGD
Primary source
RGD:7568369
See related
AllianceGenome:RGD:7568369
Gene type
ncRNA
RefSeq status
MODEL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Expression
Biased expression in Kidney (RPKM 53.0), Adrenal (RPKM 39.1) and 5 other tissues See more
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Genomic context

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See LOC102550580 in Genome Data Viewer
Location:
10q26
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 10 NC_086028.1 (81804225..81812938, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 10 NC_051345.1 (81309310..81317103, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 10 NC_005109.4 (84195727..84199531, complement)

Chromosome 10 - NC_086028.1Genomic Context describing neighboring genes Neighboring gene microRNA 10a Neighboring gene homeo box B4 Neighboring gene homeo box B3 Neighboring gene homeobox B2 Neighboring gene homeo box B1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086028.1 Reference GRCr8

    Range
    81804225..81812938 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_005490722.2 RNA Sequence

  2. XR_010055447.1 RNA Sequence

  3. XR_010055449.1 RNA Sequence

  4. XR_005490720.2 RNA Sequence

  5. XR_010055448.1 RNA Sequence

  6. XR_357850.5 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version

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Research Materials