U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC102553423 uncharacterized LOC102553423 [ Rattus norvegicus (Norway rat) ]

Gene ID: 102553423, updated on 17-Aug-2024

Summary

Symbol
LOC102553423provided by RGD
Full Name
uncharacterized LOC102553423provided by RGD
Primary source
RGD:7559302
See related
AllianceGenome:RGD:7559302
Gene type
ncRNA
RefSeq status
MODEL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Expression
Biased expression in Thymus (RPKM 20.0), Lung (RPKM 18.1) and 9 other tissues See more
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

See LOC102553423 in Genome Data Viewer
Location:
5q36
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 5 NC_086023.1 (137094642..137099461)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 5 NC_051340.1 (131809376..131814053)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 5 NC_005104.4 (137100591..137109028)

Chromosome 5 - NC_086023.1Genomic Context describing neighboring genes Neighboring gene ST3 beta-galactoside alpha-2,3-sialyltransferase 3 Neighboring gene uncharacterized LOC134486979 Neighboring gene lysine demethylase 4A Neighboring gene protein tyrosine phosphatase, receptor type, F Neighboring gene SZT2 subunit of KICSTOR complex Neighboring gene hydroxypyruvate isomerase Neighboring gene mediator complex subunit 8

Genomic regions, transcripts, and products

Expression

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086023.1 Reference GRCr8

    Range
    137094642..137099461
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_001838045.3 RNA Sequence