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Platr11 pluripotency associated transcript 11 [ Mus musculus (house mouse) ]

Gene ID: 102635911, updated on 9-Dec-2024

Summary

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Official Symbol
Platr11provided by MGI
Official Full Name
pluripotency associated transcript 11provided by MGI
Primary source
MGI:MGI:5504090
See related
AllianceGenome:MGI:5504090
Gene type
ncRNA
RefSeq status
MODEL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Meteor; Gm26975; linc1405
Summary
Is active in nucleus. [provided by Alliance of Genome Resources, Dec 2024]
Expression
Low expression observed in reference dataset See more
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Genomic context

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See Platr11 in Genome Data Viewer
Location:
9 F3; 9
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 9 NC_000075.7 (118231085..118276245, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 9 NC_000075.6 (118402017..118447177, complement)

Chromosome 9 - NC_000075.7Genomic Context describing neighboring genes Neighboring gene CapStarr-seq enhancer MGSCv37_chr9:118105829-118106030 Neighboring gene predicted gene, 53195 Neighboring gene STARR-seq mESC enhancer starr_25451 Neighboring gene predicted gene, 33088 Neighboring gene CapStarr-seq enhancer MGSCv37_chr9:118296871-118297054 Neighboring gene CapStarr-seq enhancer MGSCv37_chr9:118305590-118305773 Neighboring gene CapStarr-seq enhancer MGSCv37_chr9:118305925-118306034 Neighboring gene CRISPRi-validated cis-regulatory element for Eomes, Platr11 and Vill Neighboring gene RIKEN cDNA 4933432G23 gene Neighboring gene predicted gene, 33285 Neighboring gene predicted gene, 33408 Neighboring gene STARR-seq mESC enhancer starr_25456 Neighboring gene predicted gene, 22479 Neighboring gene eomesodermin

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. A Linc1405/Eomes Complex Promotes Cardiac Mesoderm Specification and Cardiogenesis. Guo X, et al. Cell Stem Cell, 2018 Jun 1. PMID 29754779
  2. Complex regulation of Eomes levels mediated through distinct functional features of the Meteor long non-coding RNA locus. Gil N, et al. Cell Rep, 2023 Jun 27. PMID 37256750, Free PMC Article
  3. lincRNAs act in the circuitry controlling pluripotency and differentiation. Guttman M, et al. Nature, 2011 Aug 28. PMID 21874018, Free PMC Article
  4. Local regulation of gene expression by lncRNA promoters, transcription and splicing. Engreitz JM, et al. Nature, 2016 Nov 17. PMID 27783602, Free PMC Article
  5. Regulation of the ESC transcriptome by nuclear long noncoding RNAs. Bergmann JH, et al. Genome Res, 2015 Sep. PMID 26048247, Free PMC Article

See all (7) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Complex regulation of Eomes levels mediated through distinct functional features of the Meteor long non-coding RNA locus.
    Title: Complex regulation of Eomes levels mediated through distinct functional features of the Meteor long non-coding RNA locus.
Submit: New GeneRIF Correction

General gene information

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Gene Ontology Provided by MGI

Component Evidence Code Pubs
is_active_in nucleus IDA
Inferred from Direct Assay
more info
 PubMed 

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000075.7 Reference GRCm39 C57BL/6J

    Range
    118231085..118276245 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_001779318.2 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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