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Gm28867 predicted gene 28867 [ Mus musculus (house mouse) ]

Gene ID: 102636140, updated on 22-Oct-2024

Summary

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Official Symbol
Gm28867provided by MGI
Official Full Name
predicted gene 28867provided by MGI
Primary source
MGI:MGI:5579573
See related
Ensembl:ENSMUSG00000099936 AllianceGenome:MGI:5579573
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Expression
Low expression observed in reference dataset See more
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Genomic context

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See Gm28867 in Genome Data Viewer
Location:
1 E2.3; 1
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 1 NC_000067.7 (118287052..118291180)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 1 NC_000067.6 (118359322..118363450)

Chromosome 1 - NC_000067.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_01975 Neighboring gene STARR-positive B cell enhancer ABC_E5790 Neighboring gene translin Neighboring gene nucleolar protein interacting with the FHA domain of MKI67 Neighboring gene STARR-seq mESC enhancer starr_01976 Neighboring gene STARR-positive B cell enhancer mm9_chr1:120284737-120285037 Neighboring gene STARR-positive B cell enhancer mm9_chr1:120285334-120285635 Neighboring gene STARR-positive B cell enhancer mm9_chr1:120285732-120286033 Neighboring gene STARR-positive B cell enhancer ABC_E10028 Neighboring gene STARR-seq mESC enhancer starr_01978 Neighboring gene STARR-seq mESC enhancer starr_01979 Neighboring gene CLIP associating protein 1 Neighboring gene RIKEN cDNA 2900060B14 gene Neighboring gene predicted gene, 26080

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. The Vertebrate Genome Annotation browser 10 years on. Harrow JL, et al. Nucleic Acids Res, 2014 Jan. PMID 24316575, Free PMC Article
  2. Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Zambrowicz BP, et al. Proc Natl Acad Sci U S A, 2003 Nov 25. PMID 14610273, Free PMC Article
  3. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  4. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  5. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article

See all (9) citations in PubMed

GeneRIFs: Gene References Into Functions

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_166200.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC136636
    Related
    ENSMUST00000257131.1

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000067.7 Reference GRCm39 C57BL/6J

    Range
    118287052..118291180
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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