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Gm20544 predicted gene 20544 [ Mus musculus (house mouse) ]

Gene ID: 102636262, updated on 2-Nov-2024

Summary

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Official Symbol
Gm20544provided by MGI
Official Full Name
predicted gene 20544provided by MGI
Primary source
MGI:MGI:5142009
See related
Ensembl:ENSMUSG00000092569 AllianceGenome:MGI:5142009
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Summary
Is expressed in several structures, including brain; genitourinary system; gut; liver; and spleen. [provided by Alliance of Genome Resources, Nov 2024]
Expression
Ubiquitous expression in heart adult (RPKM 4.9), CNS E11.5 (RPKM 2.2) and 27 other tissues See more
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Genomic context

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See Gm20544 in Genome Data Viewer
Location:
18 E3; 18 51.06 cM
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 18 NC_000084.7 (75491710..75500159, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 18 NC_000084.6 (75358639..75367088, complement)

Chromosome 18 - NC_000084.7Genomic Context describing neighboring genes Neighboring gene dymeclin Neighboring gene STARR-seq mESC enhancer starr_45034 Neighboring gene STARR-seq mESC enhancer starr_45036 Neighboring gene predicted gene, 46624 Neighboring gene CapStarr-seq enhancer MGSCv37_chr18:75438314-75438515 Neighboring gene RIKEN cDNA 2010010A06 gene Neighboring gene STARR-seq mESC enhancer starr_45046 Neighboring gene CapStarr-seq enhancer MGSCv37_chr18:75464300-75464409 Neighboring gene STARR-positive B cell enhancer ABC_E7611 Neighboring gene STARR-seq mESC enhancer starr_45057 Neighboring gene CapStarr-seq enhancer MGSCv37_chr18:75513492-75513601 Neighboring gene STARR-seq mESC enhancer starr_45059 Neighboring gene CapStarr-seq enhancer MGSCv37_chr18:75537151-75537467 Neighboring gene STARR-seq mESC enhancer starr_45061 Neighboring gene CapStarr-seq enhancer MGSCv37_chr18:75579115-75579397 Neighboring gene SMAD family member 7 Neighboring gene predicted gene, 41776 Neighboring gene STARR-seq mESC enhancer starr_45075 Neighboring gene CBP80/20-dependent translation initiation factor Neighboring gene predicted gene, 52357

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. LncRNA-Smad7 mediates cross-talk between Nodal/TGF-β and BMP signaling to regulate cell fate determination of pluripotent and multipotent cells. Kong X, et al. Nucleic Acids Res, 2022 Oct 14. PMID 36134711, Free PMC Article
  2. Transforming growth factor-β-induced lncRNA-Smad7 inhibits apoptosis of mouse breast cancer JygMC(A) cells. Arase M, et al. Cancer Sci, 2014 Aug. PMID 24863656, Free PMC Article
  3. EUCOMM--the European conditional mouse mutagenesis program. Friedel RH, et al. Brief Funct Genomic Proteomic, 2007 Sep. PMID 17967808
  4. A large-scale, gene-driven mutagenesis approach for the functional analysis of the mouse genome. Hansen J, et al. Proc Natl Acad Sci U S A, 2003 Aug 19. PMID 12904583, Free PMC Article
  5. Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Hansen GM, et al. Genome Res, 2008 Oct. PMID 18799693, Free PMC Article

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_155535.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AB904934, AC120156
    Related
    ENSMUST00000249406.1

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000084.7 Reference GRCm39 C57BL/6J

    Range
    75491710..75500159 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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