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Gm16226 predicted gene 16226 [ Mus musculus (house mouse) ]

Gene ID: 102638080, updated on 22-Oct-2024

Summary

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Official Symbol
Gm16226provided by MGI
Official Full Name
predicted gene 16226provided by MGI
Primary source
MGI:MGI:3801792
See related
Ensembl:ENSMUSG00000089743 AllianceGenome:MGI:3801792
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Gm38691
Expression
Low expression observed in reference dataset See more
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Genomic context

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See Gm16226 in Genome Data Viewer
Location:
5 E4; 5
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 5 NC_000071.7 (99830280..99863633)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 5 NC_000071.6 (99700360..99716008)

Chromosome 5 - NC_000071.7Genomic Context describing neighboring genes Neighboring gene RIKEN cDNA A930011G23 gene Neighboring gene predicted gene, 35253 Neighboring gene predicted gene, 35172 Neighboring gene RIKEN cDNA 4930405H06 gene Neighboring gene STARR-seq mESC enhancer starr_13710 Neighboring gene STARR-seq mESC enhancer starr_13711 Neighboring gene STARR-seq mESC enhancer starr_13713 Neighboring gene predicted gene, 38413 Neighboring gene STARR-seq mESC enhancer starr_13714 Neighboring gene predicted gene, 42126

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. The Vertebrate Genome Annotation browser 10 years on. Harrow JL, et al. Nucleic Acids Res, 2014 Jan. PMID 24316575, Free PMC Article
  2. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  3. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  4. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
  5. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article

See all (8) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Clone Names

  • AC125319.1

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_168095.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longest transcript.
    Source sequence(s)
    AC125319
    Related
    ENSMUST00000159950.9

  2. NR_172364.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC125319, AC132386
    Related
    ENSMUST00000161197.3

  3. NR_172365.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC125319, AC132386

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000071.7 Reference GRCm39 C57BL/6J

    Range
    99830280..99863633
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NR_166665.1: Suppressed sequence

    Description
    NR_166665.1: This RefSeq was removed because it was annotated on the wrong strand.
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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