These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

1. NM_001305132.1 → NP_001292061.1  uncharacterized protein LOC102639598 isoform 1

   See identical proteins and their annotated locations for NP_001292061.1

   Status: VALIDATED

   Description

   Transcript Variant: This variant (1) encodes the longer isoform (1).

   Source sequence(s)

   AL845456

   Consensus CDS

   CCDS79875.1

   UniProtKB/TrEMBL

   A2ARL4

   Related

   ENSMUSP00000096605.3, ENSMUST00000099007.3

   Conserved Domains (5) summary

   smart00349
   Location:4 → 45

   KRAB; krueppel associated box

   COG5048
   Location:74 → 133

   COG5048; FOG: Zn-finger [General function prediction only]

   sd00017
   Location:79 → 97

   ZF_C2H2; C2H2 Zn finger [structural motif]

   pfam01352
   Location:4 → 43

   KRAB; KRAB box

   pfam13465
   Location:89 → 114

   zf-H2C2_2; Zinc-finger double domain

2. NM_001305133.1 → NP_001292062.1  uncharacterized protein LOC102639598 isoform 2

   See identical proteins and their annotated locations for NP_001292062.1

   Status: VALIDATED

   Description

   Transcript Variant: This variant (2) contains an alternate exon in the 5' region and initiates translation at a downstream start codon compared to variant 1. The encoded isoform (2) has a shorter N-terminus than isoform 1.

   Source sequence(s)

   AL845456

   UniProtKB/TrEMBL

   D3YYR3

   Conserved Domains (2) summary

   sd00017
   Location:47 → 65

   ZF_C2H2; C2H2 Zn finger [structural motif]

   pfam13465
   Location:57 → 82

   zf-H2C2_2; Zinc-finger double domain

RNA

1. NR_130970.1 RNA Sequence

   Status: VALIDATED

   Description

   Transcript Variant: This variant (3) lacks an exon and contains two alternate 3' exons, compared to variant 1. This variant is represented as non-coding because the use of the translational start codon used in variant 1 renders the transcript a candidate for nonsense-mediated mRNA decay (NMD).

   Source sequence(s)

   AL845456

   Related

   ENSMUST00000134982.8

The following sections contain reference sequences that belong to a specific genome build. Explain

This section includes genomic Reference Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate assemblies. Model RNAs and proteins are also reported here.

Reference GRCm39 C57BL/6J

Genomic

1. NC_000068.8 Reference GRCm39 C57BL/6J

   Range

   176584302..176619606 complement

   Download

   GenBank, FASTA, Sequence Viewer (Graphics)

The following Reference Sequences have been suppressed. Explain

These RefSeqs were suppressed for the cited reason(s). Suppressed RefSeqs do not appear in BLAST databases, related sequence links, or BLAST links (BLink), but may still be retrieved by clicking on their accession.version below.

1. NM_001080980.1: Suppressed sequence

   Description

   NM_001080980.1: This RefSeq was permanently suppressed because it was mostly repetitive sequence.

2. NM_029813.2: Suppressed sequence

   Description

   NM_029813.2: This RefSeq was permanently suppressed because it was mostly repetitive sequence.

3. NM_172929.2: Suppressed sequence

   Description

   NM_172929.2: This RefSeq was permanently suppressed because it was mostly repetitive sequence.