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Gm36793 predicted gene, 36793 [ Mus musculus (house mouse) ]

Gene ID: 102640815, updated on 17-Aug-2024

Summary

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Official Symbol
Gm36793provided by MGI
Official Full Name
predicted gene, 36793provided by MGI
Primary source
MGI:MGI:5595952
See related
Ensembl:ENSMUSG00000106255 AllianceGenome:MGI:5595952
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Expression
Low expression observed in reference dataset See more
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Genomic context

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See Gm36793 in Genome Data Viewer
Location:
5 E4; 5
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 5 NC_000071.7 (101057866..101061558, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 5 NC_000071.6 (100910000..100913692, complement)

Chromosome 5 - NC_000071.7Genomic Context describing neighboring genes Neighboring gene RIKEN cDNA 4930458D05 gene Neighboring gene STARR-positive B cell enhancer mm9_chr5:101285611-101285912 Neighboring gene STARR-seq mESC enhancer starr_13732 Neighboring gene STARR-positive B cell enhancer ABC_E2164 Neighboring gene predicted gene, 46917 Neighboring gene glycerol-3-phosphate acyltransferase 3 Neighboring gene STARR-positive B cell enhancer ABC_E9257 Neighboring gene STARR-positive B cell enhancer ABC_E4769 Neighboring gene predicted gene, 36740 Neighboring gene STARR-seq mESC enhancer starr_13733 Neighboring gene STARR-seq mESC enhancer starr_13734 Neighboring gene predicted gene, 36851 Neighboring gene predicted gene 3032

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  2. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  3. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
  4. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article
  5. Functional annotation of a full-length mouse cDNA collection. Kawai J, et al. Nature, 2001 Feb 8. PMID 11217851

See all (7) citations in PubMed

GeneRIFs: Gene References Into Functions

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_168093.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC107774
    Related
    ENSMUST00000199211.2

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000071.7 Reference GRCm39 C57BL/6J

    Range
    101057866..101061558 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NR_166652.1: Suppressed sequence

    Description
    NR_166652.1: This RefSeq was removed because it was annotated on the wrong strand.
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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