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LOC102723530 uncharacterized LOC102723530 [ Homo sapiens (human) ]

Gene ID: 102723530, updated on 10-Dec-2024

Summary

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Gene symbol
LOC102723530
Gene description
uncharacterized LOC102723530
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC102723530 in Genome Data Viewer
Location:
2p23.2
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (28446763..28450185, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (28490017..28493443, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (28669630..28673052, complement)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105374383 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:28602778-28603278 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:28603279-28603779 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11307 Neighboring gene H3K27ac hESC enhancer GRCh37_chr2:28615755-28616686 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:28616842-28617342 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:28617343-28617843 Neighboring gene FOSL2 antisense RNA 1 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15515 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:28635908-28636512 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:28636513-28637117 Neighboring gene FOS like 2, AP-1 transcription factor subunit Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:28662749-28663248 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:28674597-28675110 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:28675111-28675624 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15516 Neighboring gene small nuclear ribonucleoprotein polypeptide G pseudogene 7 Neighboring gene phospholipase B1 Neighboring gene Sharpr-MPRA regulatory region 15095 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:28768409-28768908 Neighboring gene Sharpr-MPRA regulatory region 13650 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11309 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11310 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15517 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:28813372-28814338 Neighboring gene Sharpr-MPRA regulatory region 1316 Neighboring gene H3K27ac hESC enhancer GRCh37_chr2:28829144-28829775 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:28829776-28830406 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:28830407-28831038 Neighboring gene Sharpr-MPRA regulatory region 9151 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:28833844-28834508 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15519 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15520 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15521 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15522

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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Clone Names

  • AC104695.4

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_187668.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC104695

  2. NR_187669.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC104695

  3. NR_187670.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC104695

  4. NR_187671.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC104695

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

    Range
    28446763..28450185 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060926.1 Alternate T2T-CHM13v2.0

    Range
    28490017..28493443 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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