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PPM1B-DT PPM1B divergent transcript [ Homo sapiens (human) ]

Gene ID: 102723904, updated on 28-Oct-2024

Summary

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Official Symbol
PPM1B-DTprovided by HGNC
Official Full Name
PPM1B divergent transcriptprovided by HGNC
Primary source
HGNC:HGNC:55161
See related
AllianceGenome:HGNC:55161
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Restricted expression toward testis (RPKM 2.7) See more
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Genomic context

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See PPM1B-DT in Genome Data Viewer
Location:
2p21
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (44161184..44168792, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (44166527..44174141, complement)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124907757 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15683 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr2:44352521-44353222 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:44361873-44362746 Neighboring gene RNA, U6 small nuclear 566, pseudogene Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11430 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11431 Neighboring gene decaprenyl diphosphate synthase subunit 1 pseudogene 2 Neighboring gene Sharpr-MPRA regulatory region 13633 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15684 Neighboring gene protein phosphatase, Mg2+/Mn2+ dependent 1B Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:44415461-44416353 Neighboring gene H3K27ac hESC enhancer GRCh37_chr2:44461053-44461554 Neighboring gene H3K27ac hESC enhancer GRCh37_chr2:44461555-44462054 Neighboring gene uncharacterized LOC124906174 Neighboring gene ribosomal protein L12 pseudogene 19

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh38)

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

    Range
    44161184..44168792 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_940034.3 RNA Sequence

  2. XR_940035.3 RNA Sequence

  3. XR_940036.3 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060926.1 Alternate T2T-CHM13v2.0

    Range
    44166527..44174141 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007072019.1 RNA Sequence

  2. XR_007072017.1 RNA Sequence

  3. XR_007072018.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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