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TBX18-AS1 TBX18 antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 102724201, updated on 22-Oct-2024

Summary

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Official Symbol
TBX18-AS1provided by HGNC
Official Full Name
TBX18 antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:52256
See related
Ensembl:ENSG00000228290 AllianceGenome:HGNC:52256
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Restricted expression toward testis (RPKM 10.3) See more
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Genomic context

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See TBX18-AS1 in Genome Data Viewer
Location:
6q14.3
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (84689458..84709534)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 6 NC_060930.1 (85906681..85926762)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (85399176..85419252)

Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107986620 Neighboring gene uncharacterized LOC107986619 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr6:85134274-85134839 Neighboring gene long intergenic non-protein coding RNA 1611 Neighboring gene SMARCE1 pseudogene 2 Neighboring gene NANOG hESC enhancer GRCh37_chr6:85246850-85247358 Neighboring gene uncharacterized LOC124901519 Neighboring gene uncharacterized LOC124901353 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:85473049-85473633 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:85473634-85474217 Neighboring gene Sharpr-MPRA regulatory region 2176 Neighboring gene T-box transcription factor 18

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_125875.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longest transcript.
    Source sequence(s)
    AW195748, BU853872, DB451368
    Related
    ENST00000658089.2

  2. NR_125876.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) uses an alternate splice site at the 5' terminal exon, resulting in a shorter transcript than variant 1.
    Source sequence(s)
    AW195748, DB451368
    Related
    ENST00000589304.7

  3. NR_125877.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) uses alternate splice sites at the 5' terminal exon and at an internal exon, resulting in a shorter transcript than variant 1.
    Source sequence(s)
    AW195748, DB451368
    Related
    ENST00000423086.3

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

    Range
    84689458..84709534
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060930.1 Alternate T2T-CHM13v2.0

    Range
    85906681..85926762
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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