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LINC01919 long intergenic non-protein coding RNA 1919 [ Homo sapiens (human) ]

Gene ID: 102724651, updated on 17-Sep-2024

Summary

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Official Symbol
LINC01919provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1919provided by HGNC
Primary source
HGNC:HGNC:52739
See related
Ensembl:ENSG00000263438 AllianceGenome:HGNC:52739
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Restricted expression toward testis (RPKM 1.2) See more
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Genomic context

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See LINC01919 in Genome Data Viewer
Location:
18q21.2
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 18 NC_000018.10 (53568447..53597851)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 18 NC_060942.1 (53771587..53801015)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 18 NC_000018.9 (51094817..51124221)

Chromosome 18 - NC_000018.10Genomic Context describing neighboring genes Neighboring gene DCC netrin 1 receptor Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr18:50780507-50781098 Neighboring gene microRNA 4528 Neighboring gene uncharacterized LOC124904305 Neighboring gene uncharacterized LOC124904304 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr18:51037281-51038480 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr18:51093005-51093861 Neighboring gene long intergenic non-protein coding RNA 1917 Neighboring gene ribosomal protein L29 pseudogene 32 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr18:51309208-51310407 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr18:51377120-51377889 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_48020 Neighboring gene NANOG hESC enhancer GRCh37_chr18:51595986-51596496 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 13338 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr18:51650065-51650829 Neighboring gene Sharpr-MPRA regulatory region 14779 Neighboring gene NANOG hESC enhancer GRCh37_chr18:51653946-51654503 Neighboring gene MPRA-validated peak3156 silencer Neighboring gene ATAC-STARR-seq lymphoblastoid active region 13340 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 13341 Neighboring gene small nucleolar RNA, H/ACA box 37 Neighboring gene methyl-CpG binding domain protein 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. Kimura K, et al. Genome Res, 2006 Jan. PMID 16344560, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_110798.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    BX088865, DB079133
    Related
    ENST00000578610.5

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000018.10 Reference GRCh38.p14 Primary Assembly

    Range
    53568447..53597851
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060942.1 Alternate T2T-CHM13v2.0

    Range
    53771587..53801015
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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