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PPP1R3B-DT PPP1R3B divergent transcript [ Homo sapiens (human) ]

Gene ID: 102724880, updated on 28-Oct-2024

Summary

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Official Symbol
PPP1R3B-DTprovided by HGNC
Official Full Name
PPP1R3B divergent transcriptprovided by HGNC
Primary source
HGNC:HGNC:56150
See related
Ensembl:ENSG00000248538 AllianceGenome:HGNC:56150
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
AC02278.4
Expression
Low expression observed in reference dataset See more
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Genomic context

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See PPP1R3B-DT in Genome Data Viewer
Location:
8p23.1
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 8 NC_000008.11 (9151725..9169597)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 8 NC_060932.1 (10574444..10592354, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 8 NC_000008.10 (9009235..9027107)

Chromosome 8 - NC_000008.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112268402 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:8989159-8989659 Neighboring gene Sharpr-MPRA regulatory region 9732 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:8997999-8998498 Neighboring gene uncharacterized LOC124901882 Neighboring gene protein phosphatase 1 regulatory subunit 3B Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:9007568-9008516 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26981 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18906 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr8:9040517-9041502 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:9041503-9042488 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr8:9046079-9047278 Neighboring gene uncharacterized LOC101929128 Neighboring gene ubiquitin-conjugating enzyme E2 variant 1-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. LncRNA-AC02278.4 Is a Novel Prognostic Biomarker That Promotes Tumor Growth and Metastasis in Lung Adenocarcinoma. Chen X, et al. Front Oncol, 2022. PMID 35463380, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See Variation Viewer (GRCh37.p13)

General gene information

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Other Names

  • RP11-10A14.5

Clone Names

  • AP000695.2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_183344.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC022784

  2. NR_183345.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC022784

  3. NR_183346.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC022784

  4. NR_183347.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC022784

  5. NR_183348.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC022784

  6. NR_183349.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC022784
    Related
    ENST00000820987.1

  7. NR_183350.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC022784
    Related
    ENST00000820995.1

  8. NR_183351.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC022784
    Related
    ENST00000820988.1

  9. NR_183352.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC022784

  10. NR_183353.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC022784
    Related
    ENST00000820998.1

  11. NR_183354.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC022784

  12. NR_183355.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC022784
    Related
    ENST00000820990.1

  13. NR_183356.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC022784
    Related
    ENST00000648549.3

  14. NR_183357.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC022784

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000008.11 Reference GRCh38.p14 Primary Assembly

    Range
    9151725..9169597
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p14 PATCHES

Genomic

  1. NW_018654717.1 Reference GRCh38.p14 PATCHES

    Range
    4181985..4199904 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060932.1 Alternate T2T-CHM13v2.0

    Range
    10574444..10592354 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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