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pfkfb3 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3 [ Callorhinchus milii (elephant shark) ]

Gene ID: 103187932, updated on 11-Mar-2024

Summary

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Gene symbol
pfkfb3
Gene description
6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3
See related
Ensembl:ENSCMIG00000012459
Gene type
protein coding
RefSeq status
MODEL
Organism
Callorhinchus milii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Chondrichthyes; Holocephali; Chimaeriformes; Callorhinchidae; Callorhinchus
Orthologs
human zebrafish all
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Genomic context

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See pfkfb3 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
17
Annotation release Status Assembly Chr Location
101 current IMCB_Cmil_1.0 (GCF_018977255.1) Unplaced Scaffold NW_024704746.1 (67004181..67025496, complement)
100 previous assembly Callorhinchus_milii-6.1.3 (GCF_000165045.1) Unplaced Scaffold NW_006890244.1 (302470..360807)

NW_024704746.1Genomic Context describing neighboring genes Neighboring gene Scm like with four mbt domains 2 Neighboring gene protein kinase C, theta Neighboring gene RNA binding motif protein 17 Neighboring gene transfer RNA alanine (anticodon GGC) Neighboring gene enoyl CoA hydratase domain containing 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Elephant shark genome provides unique insights into gnathostome evolution. Venkatesh B, et al. Nature, 2014 Jan 9. PMID 24402279, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 6-phosphofructo-2-kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables fructose-2,6-bisphosphate 2-phosphatase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in fructose 2,6-bisphosphate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in fructose metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 3
Names
6-phosphofructo-2-kinase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Callorhinchus milii Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IMCB_Cmil_1.0 Primary Assembly

Genomic

  1. NW_024704746.1 Reference IMCB_Cmil_1.0 Primary Assembly

    Range
    67004181..67025496 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_042335301.1 → XP_042191235.1  6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 3 isoform X4

    UniProtKB/TrEMBL
    V9KSK4
    Conserved Domains (2) summary
    PTZ00322
    Location:2 → 459
    PTZ00322; 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional
    COG0406
    Location:249 → 447
    PhoE; Broad specificity phosphatase PhoE [Carbohydrate transport and metabolism]

  2. XM_042335299.1 → XP_042191233.1  6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 3 isoform X2

    UniProtKB/TrEMBL
    V9KSK4
    Conserved Domains (2) summary
    PTZ00322
    Location:2 → 449
    PTZ00322; 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional
    COG0406
    Location:249 → 447
    PhoE; Broad specificity phosphatase PhoE [Carbohydrate transport and metabolism]

  3. XM_042335300.1 → XP_042191234.1  6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 3 isoform X3

    UniProtKB/TrEMBL
    V9KSK4
    Conserved Domains (2) summary
    PTZ00322
    Location:2 → 449
    PTZ00322; 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional
    COG0406
    Location:249 → 447
    PhoE; Broad specificity phosphatase PhoE [Carbohydrate transport and metabolism]

  4. XM_042335298.1 → XP_042191232.1  6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 3 isoform X1

    UniProtKB/TrEMBL
    V9KSK4
    Conserved Domains (2) summary
    PTZ00322
    Location:2 → 449
    PTZ00322; 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional
    COG0406
    Location:249 → 447
    PhoE; Broad specificity phosphatase PhoE [Carbohydrate transport and metabolism]
Nucleotide Protein
Heading Accession and Version

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