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LINC01391 long intergenic non-protein coding RNA 1391 [ Homo sapiens (human) ]

Gene ID: 103344930, updated on 10-Dec-2024

Summary

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Official Symbol
LINC01391provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1391provided by HGNC
Primary source
HGNC:HGNC:50666
See related
Ensembl:ENSG00000244578 AllianceGenome:HGNC:50666
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Biased expression in ovary (RPKM 1.1), endometrium (RPKM 0.8) and 2 other tissues See more
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Genomic context

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See LINC01391 in Genome Data Viewer
Location:
3q22.3
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 3 NC_000003.12 (138935189..138944020, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 3 NC_060927.1 (141676170..141685010, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (138654031..138662862, complement)

Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene ATP synthase membrane subunit c locus 1 pseudogene 3 Neighboring gene uncharacterized LOC124906289 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14767 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14768 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20607 Neighboring gene Sharpr-MPRA regulatory region 3980 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:138663365-138663954 Neighboring gene ReSE screen-validated silencer GRCh37_chr3:138665995-138666223 Neighboring gene forkhead box L2 Neighboring gene FOXL2 neighbor

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Piplartine suppresses proliferation and invasion of hepatocellular carcinoma by LINC01391-modulated Wnt/β-catenin pathway inactivation through ICAT. Fan X, et al. Cancer Lett, 2019 Sep 28. PMID 31207322
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_121649.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC092947, AK128202
    Related
    ENST00000495287.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000003.12 Reference GRCh38.p14 Primary Assembly

    Range
    138935189..138944020 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060927.1 Alternate T2T-CHM13v2.0

    Range
    141676170..141685010 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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