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LOC105123834 uncharacterized LOC105123834 [ Populus euphratica (Euphrates poplar) ]

Gene ID: 105123834, updated on 1-Aug-2024

Summary

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Gene symbol
LOC105123834
Gene description
uncharacterized LOC105123834
Gene type
protein coding
RefSeq status
MODEL
Organism
Populus euphratica
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Genomic context

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See LOC105123834 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
3
Annotation release Status Assembly Chr Location
100 current PopEup_1.0 (GCF_000495115.1) Unplaced Scaffold NW_011499857.1 (2406510..2413769, complement)

NW_011499857.1Genomic Context describing neighboring genes Neighboring gene dynein light chain, cytoplasmic-like Neighboring gene protein PLANT CADMIUM RESISTANCE 2-like Neighboring gene uncharacterized LOC105123835 Neighboring gene E3 ubiquitin-protein ligase FANCL

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_011499857.1 Unplaced Scaffold Reference PopEup_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA-DNA hybrid ribonuclease activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA integration IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: uncharacterized protein LOC105123834

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Populus euphratica Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference PopEup_1.0 Primary Assembly

Genomic

  1. NW_011499857.1 Reference PopEup_1.0 Primary Assembly

    Range
    2406510..2413769 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011023574.1 → XP_011021876.1  LOW QUALITY PROTEIN: uncharacterized protein LOC105123834

    UniProtKB/TrEMBL
    A0AAJ6U393
    Conserved Domains (7) summary
    cd00303
    Location:765 → 858
    retropepsin_like; Retropepsins; pepsin-like aspartate proteases
    cd01647
    Location:1260 → 1437
    RT_LTR; RT_LTR: Reverse transcriptases (RTs) from retrotransposons and retroviruses which have long terminal repeats (LTRs) in their DNA copies but not in their RNA template. RT catalyzes DNA replication from an RNA template, and is responsible for the ...
    pfam03732
    Location:177 → 252
    Retrotrans_gag; Retrotransposon gag protein
    cd09274
    Location:1540 → 1649
    RNase_HI_RT_Ty3; Ty3/Gypsy family of RNase HI in long-term repeat retroelements
    cd09279
    Location:1677 → 1801
    RNase_HI_like; RNAse HI family that includes archaeal, some bacterial as well as plant RNase HI
    pfam00078
    Location:1277 → 1437
    RVT_1; Reverse transcriptase (RNA-dependent DNA polymerase)
    pfam00665
    Location:1965 → 2076
    rve; Integrase core domain
Nucleotide Protein
Heading Accession and Version

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