Gm38999 predicted gene, 38999 [Mus musculus (house mouse)] - Gene

Summary

Official Symbol: Gm38999provided by MGI
Official Full Name: predicted gene, 38999provided by MGI
Primary source: MGI:MGI:5621884
See related: Ensembl:ENSMUSG00000118553 AllianceGenome:MGI:5621884
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Mus musculus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as: Gm52993; C7H19orf84
Summary: Involved in retrotransposon silencing by piRNA-directed DNA methylation. Located in nucleoplasm. Orthologous to human C19orf84 (chromosome 19 open reading frame 84). [provided by Alliance of Genome Resources, Dec 2024]
Expression: Low expression observed in reference dataset See more
Orthologs: human all
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Genomic context

Location:: 7 B3; 7

Exon count:: 2

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	GRCm39 (GCF_000001635.27)	7	NC_000073.7 (43077094..43079260)
108.20200622	previous assembly	GRCm38.p6 (GCF_000001635.26)	7	NC_000073.6 (43427670..43429836)

Chromosome 7 - NC_000073.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: Mouse ENCODE transcriptome data
Description: RNA profiling data sets generated by the Mouse ENCODE project.
BioProject: PRJNA66167
Publication: PMID 25409824
Analysis date: n/a

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

C19ORF84 connects piRNA and DNA methylation machineries to defend the mammalian germ line.
Title: C19ORF84 connects piRNA and DNA methylation machineries to defend the mammalian germ line.

Submit: New GeneRIF Correction

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics (MGI)

Endonuclease-mediated (1) 1 citation

General gene information

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Gene Ontology Provided by MGI

Function	Evidence Code	Pubs
enables protein binding	IPI Inferred from Physical Interaction more info	PubMed

Process	Evidence Code	Pubs
involved_in transposable element silencing	IDA Inferred from Direct Assay more info	PubMed
involved_in transposable element silencing by piRNA-mediated DNA methylation	IMP Inferred from Mutant Phenotype more info	PubMed

Component	Evidence Code	Pubs
located_in nucleoplasm	IDA Inferred from Direct Assay more info	PubMed
located_in nucleoplasm	TAS Traceable Author Statement more info

General protein information

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Preferred Names: uncharacterized protein C19orf84 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001370852.1 → NP_001357781.1 uncharacterized protein C19orf84 homolog

Status: VALIDATED

Source sequence(s)

AC149091

Consensus CDS

CCDS90216.1

UniProtKB/Swiss-Prot

H3BKT1

Related

ENSMUSP00000159166.2, ENSMUST00000239023.2

Conserved Domains (1) summary

pfam17703
Location:1 → 185

DUF5549; Family of unknown function (DUF5549)