U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Gm39244 predicted gene, 39244 [ Mus musculus (house mouse) ]

Gene ID: 105243280, updated on 17-Aug-2024

Summary

Go to the top of the page Help
Official Symbol
Gm39244provided by MGI
Official Full Name
predicted gene, 39244provided by MGI
Primary source
MGI:MGI:5622129
See related
AllianceGenome:MGI:5622129
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Gm45529
Expression
Biased expression in CNS E18 (RPKM 1.8), whole brain E14.5 (RPKM 1.7) and 3 other tissues See more
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See Gm39244 in Genome Data Viewer
Location:
8 D3; 8
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 8 NC_000074.7 (109254262..109264482, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 8 NC_000074.6 (108527630..108537850, complement)

Chromosome 8 - NC_000074.7Genomic Context describing neighboring genes Neighboring gene zinc finger homeobox 3 Neighboring gene STARR-seq mESC enhancer starr_22628 Neighboring gene predicted gene, 39243 Neighboring gene STARR-seq mESC enhancer starr_22629 Neighboring gene predicted gene, 42041 Neighboring gene brown adipose tissue enriched long non-coding RNA 1 Neighboring gene STARR-seq mESC enhancer starr_22630 Neighboring gene STARR-positive B cell enhancer ABC_E6681 Neighboring gene predicted gene, 51548 Neighboring gene STARR-seq mESC enhancer starr_22634 Neighboring gene STARR-positive B cell enhancer ABC_E2273 Neighboring gene predicted gene, 42043

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  2. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  3. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
  4. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article
  5. Functional annotation of a full-length mouse cDNA collection. Kawai J, et al. Nature, 2001 Feb 8. PMID 11217851

See all (7) citations in PubMed

GeneRIFs: Gene References Into Functions

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_166530.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC122865

  2. NR_166531.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC122865

  3. NR_166532.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC122865

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000074.7 Reference GRCm39 C57BL/6J

    Range
    109254262..109264482 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Research Materials